UFO04023.5prime Sequence
1134 bp (959 high quality bases) assembled on 2009-02-13
> UFO04023.5prime
CAGTCGACATGGCTACATCGGATTTTGTTCTGGGCGGCCTGGCCTCCGTG
GGGGCCACCTTCTTCACCAATCCCATCGAGGTGATCAAGACACGGATCCA
GCTGCAGGGCGAGCTGGCGGCACGGGGTACCTATGTGGAGCCCTACAAGG
GGATTGTCAATGCCTTCATTACGGTGGCCAAAAATGATGGCATTACGGGG
CTCCAAAAGGGCCTCGCACCGGCCTTGTACTTCCAGTTCATCATCAATTC
CTTCCGGCTCAGCATTTATTCGGAGGCAATGGAGAGGCGGTGGATGCACA
ACCGGAAGGGTGAGGTGTCCTACGGAATGGGACTACTGTGGGGCGCCATC
GGCGGCGTCGTGGGGTGCTACTTCTCCAGTCCATTTTTCCTGATCAAAAC
TCAGCTGCAATCACAAGCCGCCAAGCAAATCGCCGTTGGCTACCAACATG
CCCATACTTCCATGACAGATGCCCTGCGTCAGATCTACTCCAGGAATGGA
GTACGAGGACTGTGGAGAGGATCTGTGGCCGCATTGCCCAGGGCGGCTTT
GGGATCAGGTGCCCAGATAGCCACCTTTGGTAAGACCAAAGCCCTGTTGG
TCCAGTACGATCTGGTGACCCAGCCCACGTTGAACTCCTTCTCGGCTGGC
TTGATAGCCGGATCCATTATGTCGGTGGCCATAACGCCGCCAGATGTAAT
CACCACGCGTCTGTACAATCAGGGCGTAGACGCCGAAGGACGCGGTCTTC
TTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGATCAGAGGGC
GTTTATGGTATGTAAAGGGGTTCTGGGCCAACTACTTGCGCATTGCCCCC
AACTCAACCCTTGTGCTGCTATTCTTTGACGAAGCTGGTCGCCGTACGCA
CAAAGTATAGTAATCAAGCCAGCTTTTCTTAGACCATTCGTTTGGCGCGC
GGGCCCCAGGTAAGGTGTTCATAATCATAATCATAATTCATAATCATAAT
CACACTAGCCTAGAGATCTGTCATGACTAGTGCTTGGATCTCACAATAAA
AAACGCCCGGCGCAACCCGAGCGTTCGACAAATCCGATTGGGAGTTCGAA
GTCATTTACCTTGAATCTATCACACAAGGATTCC
UFO04023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8323-RA | 1460 | CG8323-RA | 226..1136 | 7..917 | 4495 | 99.7 | Plus |
| CG18327-RB | 998 | CG18327-RB | 45..485 | 9..449 | 360 | 73 | Plus |
| CG18327-RA | 1064 | CG18327-RA | 111..551 | 9..449 | 360 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14166138..14166667 | 388..917 | 2525 | 99.2 | Plus |
| 2R | 25286936 | 2R | 14165276..14165526 | 7..257 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 14165588..14165724 | 256..392 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 14167092..14167277 | 9..194 | 270 | 76.3 | Plus |
| 2R | 25286936 | 2R | 14168910..14168994 | 63..147 | 260 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:21 has no hits.
UFO04023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:00 Download gff for
UFO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8323-RA | 218..1132 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:48 Download gff for
UFO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8323-RA | 222..1136 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:00 Download gff for
UFO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8323-RA | 222..1136 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:00 Download gff for
UFO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14165272..14165525 | 1..256 | 98 | -> | Plus |
| 2R | 14165589..14165724 | 257..392 | 100 | -> | Plus |
| 2R | 14166143..14166667 | 393..917 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:48 Download gff for
UFO04023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10052777..10053030 | 1..256 | 98 | -> | Plus |
| arm_2R | 10053094..10053229 | 257..392 | 100 | -> | Plus |
| arm_2R | 10053648..10054172 | 393..917 | 99 | == | Plus |
