UFO04024.5prime Sequence
1067 bp (1009 high quality bases) assembled on 2009-02-13
> UFO04024.5prime
CAGTCGACATGACGTGCGGAAAATGTCGCGGTCACAAGGAAAGGAGCGTG
AAGTGCCTTTTAGCCGCTTTGGACACAATCAAAGAGCACGCCTTAATGAT
GCAACGAGACTCAGAGGAAAGTTCGAGGACCATAGAACAGCTAAAGATCC
ACAATGAAAAGCTGCACAAGGCCTTGGACTTGCTGAAGGAGCGGCAGGCA
TCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTGTTGCCCACGAAGATCAA
GGATGACATATCGCCGCAGACACAAAGCCAAAACTCCCTTAACATGAACA
TAGCCATTAGCAACATAGATCTATCCGACGAGGACCAGGAAGTGGAGGAA
GACGAGAGCATTACCGAAACGGAGACCACTGTCCTCAGCCCGCGCAAACT
ACGATTGCCAAGTCGAAAGTCGGACATCCGGGATCTGGAGAATGTGCAGC
CGAGCAATGTTTCTGCGGTGGGAAATAGTTGGACCCGCAAGACACCCAAG
AATCAGGGAGTCCTTACAAAGCTATCACTCACACACAAGAGCAACAACTT
GAACTTGAAGCAAACTCGCCTTAAATTCGAAGCAAATAGGACGAGCACCA
GTGAAAAGGAAGTCATAGAGGAGAGTCCCAATTTGAGCACCAATCTGAAG
AGATCTAGGCCGCCGAGATCTTTAATGCAGAGAACAGACAACACGAGCGT
TTCAAACGCAGACGACTCGCTTACCACCACCAGCAATAGCACAGTCAAGA
CCATAAAACCAAGTTTTCAGTTGGACATGGACGAGTTTAAATTGGACAGC
TCGGAAGATCAGATAATGCCCCCCACCGAACACGCCGCCAGGTTTAAAGA
TCAGCAACACCTCGGATAGTGTAGTTTTATTGACGCCTGCGACCCAGGAT
ATATCTTTGTGAATGATACACTCGAGATGTGAGCAAACTGGGCACCATGA
TGTCTGGCCGAAATTATGACGACGATGACGACCGTGCTCGAGTGCTTTAA
GACAGTACGAGAGTTATATGACAGCAGAGCAAAACTACAAATGCCCCCAA
GTTGAGAGGCGTCATTC
UFO04024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5872-RA | 1859 | CG5872-RA | 133..1204 | 9..1067 | 4935 | 98.2 | Plus |
| CG5872-RB | 1866 | CG5872-RB | 133..1211 | 9..1067 | 4855 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20436527..20437112 | 97..682 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 20437252..20437588 | 681..1012 | 1325 | 97.6 | Plus |
| 3L | 28110227 | 3L | 20436382..20436469 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:46 has no hits.
UFO04024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:59 Download gff for
UFO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 126..1155 | 9..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:35 Download gff for
UFO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 133..1162 | 9..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:37 Download gff for
UFO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5872-RA | 133..1162 | 9..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:37 Download gff for
UFO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20436382..20436469 | 9..96 | 100 | -> | Plus |
| 3L | 20436527..20437112 | 97..682 | 100 | -> | Plus |
| 3L | 20437254..20437609 | 683..1028 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:35 Download gff for
UFO04024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20429482..20429569 | 9..96 | 100 | -> | Plus |
| arm_3L | 20429627..20430212 | 97..682 | 100 | -> | Plus |
| arm_3L | 20430354..20430709 | 683..1028 | 96 | | Plus |
