UFO04026.5prime Sequence
1111 bp (1005 high quality bases) assembled on 2009-02-13
> UFO04026.5prime
CAGTCGACATGTCGGCTGCTACGGAACAACAGAACAACGGCGATGTGGCC
GTGGAGAAGGTGGCGGCAGATGATGTGTCTGCTGTCAAGGACGATCTCAA
GGCGAAGGCGGCCGCCGAGGATAAGGCCGCTGCTGCCGATGCCGCCGGCG
ACGCGGCCGACAACGGTACGTCAAAGGACGGCGAGGATGCCGCCGATGCC
GCCGCCGCTGCCCCCGCAAAGGAATCCGTGAAAGGCACCAAGAGGCCAGC
AGAAGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCGGCCGCCG
ATGGAGATTCCGATGAGGAAGAGGCTCTGGAGGAAATCATCGAGGGCGAC
AGTGAAATCGAGAGCGACGAGTACGACATCCCCTACGATGGTGAGGAGGA
TGACATTGAATGTGATGATGATGATGATGATAATGATGACGGTTCCGGCT
CGGACGATCAGGCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAA
ACTCACCCAGGGATTGCTGAGACGAAAAACATATTTCTCATAAACCCTTT
AGGAATAGCCAGTTTCACCGTACACGCCACATCTGCGAATATATTGTGTA
GAACTGCCGAAATCGTCTGTATCACTCCAGAGCGATGAAACGTTTCAGTT
TGCTCATGAACGGGTTAACAGGGTGACATCTCATATCACCAGCTCACGTC
TTTCATTGCCA
UFO04026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bacc-RD | 2524 | CG9894-RD | 440..895 | 9..464 | 2280 | 100 | Plus |
| Bacc-RC | 2221 | CG9894-RC | 82..537 | 9..464 | 2280 | 100 | Plus |
| Bacc-RA | 1010 | CG9894-RA | 183..638 | 9..464 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2753415..2753661 | 9..255 | 1235 | 100 | Plus |
| 2L | 23513712 | 2L | 2756008..2756174 | 255..421 | 820 | 99.4 | Plus |
| 2L | 23513712 | 2L | 2756244..2756291 | 417..464 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:05 has no hits.
UFO04026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:47 Download gff for
UFO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9894-RA | 182..640 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:37 Download gff for
UFO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bacc-RA | 183..641 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:00 Download gff for
UFO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bacc-RA | 183..641 | 9..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:00 Download gff for
UFO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2753415..2753660 | 9..254 | 100 | -> | Plus |
| 2L | 2756008..2756170 | 255..417 | 100 | -> | Plus |
| 2L | 2756245..2756291 | 418..464 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:37 Download gff for
UFO04026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2753415..2753660 | 9..254 | 100 | -> | Plus |
| arm_2L | 2756008..2756170 | 255..417 | 100 | -> | Plus |
| arm_2L | 2756245..2756291 | 418..464 | 100 | == | Plus |
