UFO04027.5prime Sequence
1148 bp (1045 high quality bases) assembled on 2009-04-08
> UFO04027.5prime
CAGTCGACATGGTCTTCGACTGCGGAGTCTGGTGTGCAAAGTATTTGCTT
TGCATATTCAATTTTATATTTTTCGTGCTAGGCACAATTATATTCGGAGT
CGGACTATGGCTGGCCGTGGACAAGCACCCGCTGATTGCTCTCCTCAAGT
TGGTCGAGAGCGAGCGCATTGAGCAATTTACACAGCCACAGGCCATAGAG
CAGCTGGCCTATGTGCTCCTCGTCATCGGAGCCGTCATGTTCTTCATGAG
CTTCTTGGGCTATCTGGGAGCCATGCGCGAGTCCCGCTGTCTGCTGTCGA
CGTATGGAACCTTTTTGATCCTGCTGCTGATTGCCGAGATCGTTGCCGGC
GGATTGGGTGCCTTCTTCAAGGACAAAGTTCGTGCCGAGAGCAAAAACTT
CTTGCAGACGACCATTACCAGTTATTCGCTGGGCGAGAATGTGGATGCTA
CCTCACTGATGTGGAACCAACTGATGGGCAACTTTGGGTGCTGTGGCATC
AATGACTATCACGATTTTGATGCCTCTCCAGCGTGGGTGAACGGCAAGGG
TAACCGCACCATTCCCGATGCCTGCTGTATCCTTAAGGATGTGGCCAAGT
TGGTGCCACGCGACGAGGACTGTACAACCAACCCCAGCGACAGCAACAGT
TTCTACAAGAAGGGCTGCTATGAGGTGTTTACCGAGTGGCTGATTCGGCA
ACGTGAACTGGTCATCGTGGCCATTGCGGTGGGCATTGTGCACCTGGTCC
TCATATTCTGGCCTTTGCTCTGTGCAAGGCCTTTGCCAAATACAACGATA
TGCGTCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAACAATAAAAAACCGC
CCGGCGCAACCGAGCGTTCTGAACAAATCCAGATGAGTTCTGAGTCATTA
CTGATTCTATCACAGAGTCCAGCGAGCTCGATATCAAATTACGCCCGCTG
CCCACTCATCGCCGTACTGTTGTATTCCATAGCAATTCTGCCGACATGCA
GCATTCAAACGGCATGATGAACCCTGAAATCCGCCAACGGCATCAGAC
UFO04027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp66E-RC | 2287 | CG4999-RC | 368..1168 | 9..808 | 3965 | 99.8 | Plus |
| Tsp66E-RA | 2261 | CG4999-RA | 342..1142 | 9..808 | 3965 | 99.8 | Plus |
| Tsp66E-RB | 2155 | CG4999-RB | 236..1036 | 9..808 | 3965 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8930379..8930748 | 302..671 | 1820 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8930798..8930946 | 661..808 | 695 | 99.3 | Plus |
| 3L | 28110227 | 3L | 8928014..8928144 | 172..302 | 655 | 100 | Plus |
| 3L | 28110227 | 3L | 8926696..8926794 | 75..173 | 480 | 99 | Plus |
| 3L | 28110227 | 3L | 8926127..8926194 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:46 has no hits.
UFO04027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:01 Download gff for
UFO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66E-RC | 358..1169 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:55 Download gff for
UFO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66E-RB | 228..1039 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:49 Download gff for
UFO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66E-RB | 228..1039 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:49 Download gff for
UFO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8926119..8926192 | 1..74 | 94 | -> | Plus |
| 3L | 8926696..8926794 | 75..173 | 98 | -> | Plus |
| 3L | 8928016..8928144 | 174..302 | 100 | -> | Plus |
| 3L | 8930380..8930739 | 303..662 | 100 | -> | Plus |
| 3L | 8930800..8930949 | 663..812 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:55 Download gff for
UFO04027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8919796..8919894 | 75..173 | 98 | -> | Plus |
| arm_3L | 8921116..8921244 | 174..302 | 100 | -> | Plus |
| arm_3L | 8919219..8919292 | 1..74 | 94 | -> | Plus |
| arm_3L | 8923480..8923839 | 303..662 | 100 | -> | Plus |
| arm_3L | 8923900..8924049 | 663..812 | 98 | == | Plus |
