UFO04029.5prime Sequence
1155 bp (1065 high quality bases) assembled on 2009-04-08
> UFO04029.5prime
CAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGAAGTATACG
CTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATCTTGATTGC
CGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCTCTTCCTGG
CCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTGGATCGTTC
ATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAGGAGAACTA
TTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTTCATCCTGG
AGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACGCCTCCGAT
TTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAACAGTATCAA
TCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGAGTTCGAGT
GCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCCCTAACGGC
GACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTGGGCACATT
CACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAAAGTTGGAT
GCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCAGCCTAGGA
GCTGCAGGGGTGGTCATTGCCATCCTCCAGTTCTTTGGCGTAATCTTTGC
CTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTACTGGTTTTA
TGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAGCGAGCTCGATATCAAATTACGCCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTATTCATTTAGCATTCTGCCGACTGAAA
GCCATCACAAACGGCATGATGAACCTGAATCGCAGGCGGCATCAGCCACT
TGTCGCCTTGCGTTATATTTTGCCCTAGGTGAACGGTGCAAGGTGTCCAA
TGGCC
UFO04029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp29Fa-RC | 1052 | CG9494-RC | 167..910 | 9..752 | 3720 | 100 | Plus |
| Tsp29Fa-RB | 1247 | CG9494-RB | 362..1105 | 9..752 | 3720 | 100 | Plus |
| Tsp29Fa-RA | 963 | CG9494-RA | 78..821 | 9..752 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8935151..8935754 | 77..680 | 3020 | 100 | Plus |
| 2L | 23513712 | 2L | 8935878..8935954 | 676..752 | 385 | 100 | Plus |
| 2L | 23513712 | 2L | 8934990..8935058 | 9..77 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:37 has no hits.
UFO04029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:59 Download gff for
UFO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fa-RB | 146..897 | 1..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:49 Download gff for
UFO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fa-RA | 70..821 | 1..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:45 Download gff for
UFO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fa-RA | 70..821 | 1..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:45 Download gff for
UFO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8935883..8935954 | 681..752 | 100 | == | Plus |
| 2L | 8934982..8935058 | 1..77 | 94 | -> | Plus |
| 2L | 8935152..8935754 | 78..680 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:49 Download gff for
UFO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8934982..8935058 | 1..77 | 94 | -> | Plus |
| arm_2L | 8935152..8935754 | 78..680 | 100 | -> | Plus |
| arm_2L | 8935883..8935954 | 681..752 | 100 | == | Plus |
