UFO04030.5prime Sequence
1125 bp (987 high quality bases) assembled on 2009-04-08
> UFO04030.5prime
CAGTCTACATGTCGGCACTTGGGGATTCTGATGATGAAACTGAGTTTAAA
GAGATCAGCTCGACTAATTATCATCGTGTGCAGGAAAAGGTGGCAAAGAT
AAGCTATGCAGATGGCGTTGCCGATGGCAGGGAAAAGGTCTTCCAAGAGA
GCTTCGATGAAGGCTTTGAGAATGGCTTTAAAACTGGATTCGAACTGGCC
AAACTGAGTGCCTTCTATGAAACCATAAGCAATGCGGCGGGAGCTGAAAG
CTCCGAATGGAATGCAGAACGAGAAGCTTATCAAAAACTCCAACTGGCAG
ATGCAACAAATAAAGCACACTTCACATATTTGGAGCATCAAGGCGCTCCA
CTCAACGTTATATCCGAAAAACAAAAGACCTACGTGGACGACCTCCTAGG
AAAACTGGCACAGCAACTCCCGGCAACTACGAATTTATTCACATCGGGGA
GCGATTCTAGTGTTAATGTGGTTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCC
ATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
TAAACCCTTTAGGAAATAGGCCAGGTTTTCCCGTAACACGCACATCTTGC
GAATATATGTGTAGAAACTGCCGGAAATCGTCTTGTATTCACTCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAACGGTGTACAAGTGAACCTATCC
ATTATCACAGCTCACGGCTTCATGC
UFO04030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31142-RA | 644 | CG31142-RA | 81..545 | 9..473 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23929512..23929889 | 96..473 | 1890 | 100 | Plus |
| 3R | 32079331 | 3R | 23929323..23929417 | 9..103 | 460 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:37 has no hits.
UFO04030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:58 Download gff for
UFO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31142-RA | 72..541 | 6..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:33 Download gff for
UFO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31142-RA | 79..548 | 6..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:04 Download gff for
UFO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31142-RA | 79..548 | 6..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:04 Download gff for
UFO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23929321..23929412 | 6..98 | 98 | -> | Plus |
| 3R | 23929515..23929889 | 99..473 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:33 Download gff for
UFO04030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19755043..19755134 | 6..98 | 98 | -> | Plus |
| arm_3R | 19755237..19755611 | 99..473 | 100 | == | Plus |
