UFO04031.5prime Sequence
1133 bp (1025 high quality bases) assembled on 2009-04-08
> UFO04031.5prime
CAGTCGACATGTGCTGGAGGCTGTGCCTCCTCCACCGCTACGCCATGAGC
AGCATGTCATGGACCCTGCCACGCCTCTCGCAGTCCAGTGCATCCACCGC
CCACGGACTAGTGGGTTCCGTTCGCCTGACCTACGCCATATGTGCCTTTT
TGGCAACTTGCCTACACGCCGCCATGAGGAACATGCTCGGCATGATCATC
CTCAAGATGGTCATGCCCCGGCCGGAGGATGCACTGGTCGTTCCAGCGGG
GTTGAGTCGCCTAACGGAGGGCAATGTCACCTCCACGGGTCGATGTGGAT
CTCCTCGGGTCGTTTTCAATCCGCAGATTCAAGAGACTCAGTCGGGCGAC
TTACCATGGACCCGAAACCAGGAGCTGACCTTCCCAGGTGTCTACTACTA
TGGCTACGTGGTTTCCATCTCGCTATCCGGCTATCTGGCAGATCGGTGCA
GCAGCAAGCGGCTGTTCATCGTGTCCCTGATCTTCGAGGCTGTGGCCTAC
ATACTGCTCCCAGCAATGGCGCACTCTAGTTTCGAGGCCGGAGTGGTTGA
TCTGGTCATCTGTGGTTTACTGGCGGGCTGTGGAAATCCGGCAATGTATA
AACTGTTCGTGACCTGGGCTCATCCCACAGAGAGAACAGCGCTCCTGTCC
TTCGCCTACAGTGGTCTTCTGATGGGCTCCATGTTGGTTTACCCGGTGGC
CAGTTATCTGAGCAACTTCGGCTGGGGAACTGTCCTTCTATGTAGTCGGT
GGAGTTGGCCTCTCATTCGGCATTGCCTGCTGCTTTCTCGTTTACGACAC
CGTGGAGCAACATCCAAGGATATCGAATGAGGAGGTGGATTACCTGAGGC
AGGGCAAGAGTCAATTGGGACAGCAGCGGCAGCCAGTGTAACCATTCCCT
GAAGAGCCTGCTCGCCGCGCCGCCCGTCTACGCCTTCATCCTGACCCACA
TGTTCACACTACCCCTTCCTGTGATTGTGCAACTGATGCCGCGATTTATG
CGCGAGGCCATGGAGTTCGATCTTCCGGAGGTGGCCTTCCTCTCCGCGCG
CCCGTTTTCTGGGCGCGATCTGCTCGAAGTGATGTGCACTCTGGGTGGCG
CCATAGTGGACGAGCCGTGGTTCCCGAACCAAA
UFO04031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-RB | 1880 | CG7091-RB | 197..1291 | 9..1099 | 5090 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12978196..12978528 | 9..341 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 12979168..12979480 | 575..888 | 1520 | 99.7 | Plus |
| 3R | 32079331 | 3R | 12978874..12979111 | 339..576 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 12979539..12979754 | 888..1099 | 590 | 91.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:53:27 has no hits.
UFO04031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:57 Download gff for
UFO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 231..1338 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:30 Download gff for
UFO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 190..1297 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:03 Download gff for
UFO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 190..1297 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:03 Download gff for
UFO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12979536..12979760 | 886..1104 | 91 | | Plus |
| 3R | 12978189..12978528 | 1..341 | 98 | -> | Plus |
| 3R | 12978877..12979110 | 342..575 | 100 | -> | Plus |
| 3R | 12979169..12979477 | 576..885 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:30 Download gff for
UFO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8805258..8805482 | 886..1104 | 91 | | Plus |
| arm_3R | 8803911..8804250 | 1..341 | 98 | -> | Plus |
| arm_3R | 8804599..8804832 | 342..575 | 100 | -> | Plus |
| arm_3R | 8804891..8805199 | 576..885 | 99 | -> | Plus |
