UFO04033.5prime Sequence
1138 bp (1034 high quality bases) assembled on 2010-09-10
> UFO04033.5prime
CAGTCGACATGTCCAGCATGGGTGATCAGCGCGGGACACGGGTGTATGTC
GGCAATCTGACCGACAAAGTGAAAAAGGATGATCTGGAGGGGGAGTTCAC
AAAGTATGGCAAGCTGAATTCGGTGTGGATAGCCTTCAATCCGCCGGGAT
TTGCGTTCGTCGAGTTCGAGCACCGCGACGACGCCGAAAAGGCGTGCGAC
ATACTGAACGGATCCGAGCTGCTCGGCTCCCAGCTGCGCGTGGAGATCTC
AAAAGGGCGGCCACGCCAGGGTAGGCGTGGCGGACCCATGGACAGGGGCG
GACGACGCGGCGACTTTGGCCGGCACAGCATCACAAGCGGTGGTAGCGGC
GGAGGCGGTTTCCGGCAGCGCGGATCCAGCGGATCCTCAAGCCGGCACAC
GGAGCGGGGCTATAGCTCCGGCCGATCAGGTGCAAGCAGCTATAATGGCA
GAGAGGGCGGCGGCAGCGGCTTCAATCGCCGCGAGGTTTACGGCGGTGGA
CGCGACAGCAGCCGCTACAGCAGCGGAAGTAGCGCCAGCTACGGACGCAC
TGGTGGTCAGTCGGCCGGACGCTTCAGGTCCCGCTCGCCGGTGGGAAACC
ATCGATTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTTCATTAAGCATTCTGCC
GACATGTAAGCCATCACAAACGGCATGATGAACTTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGC
GAAGAAGTGGTCCATATTGGCCACGTTTAATCAAACTGTTGAACTCACCA
GGGATTGCTGAAACGAAAACTATTCTCAATAATCCTTTAGGATAGGCCAG
CTTCACCGTAACCGCCAATCTGCATATATGTGTCGAAC
UFO04033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-RB | 1760 | CG5655-RB | 137..736 | 9..608 | 3000 | 100 | Plus |
| Rsf1-RA | 914 | CG5655-RA | 137..736 | 9..608 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10262819..10263418 | 608..9 | 3000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:28:41 has no hits.
UFO04033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:39 Download gff for
UFO04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 157..767 | 1..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:40 Download gff for
UFO04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 129..739 | 1..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:41 Download gff for
UFO04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 129..739 | 1..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:41 Download gff for
UFO04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10262816..10263424 | 1..612 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:40 Download gff for
UFO04033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10262816..10263424 | 1..612 | 99 | | Minus |
