UFO04039.5prime Sequence
1149 bp (1014 high quality bases) assembled on 2010-09-10
> UFO04039.5prime
CAGTCGACATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGC
CTGGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACGCGACGTGT
GAACCGCGGACGACGCACCCTTACCCGCAGATACTTCACTGGCCTTGCTA
TTCCCGGATGGGCTCTCATCGTTTGTGTAGCGGTAGGTGAGCTGCTGATT
GGTGGAGCCCTCTACTTCATCCTCAAGAAGGTGATCCTGGACAAGGAACC
AGATCAGACGGCGGCCTCCTACACGCCCGCCCAGACTCATGCGACGGCCA
CACCTTATACTCCCGCCCAGACTCACGATCCGGCCACGGCCACAACCTAT
ACTCCTGCCCAGACTCATGAGACGGCCAATGTGACTCCCACTCCAACGCA
TGCCACCGCTATTGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAATCAAAACTGGT
GAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCC
TTTTAGGAAATAGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATA
TATGTTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCGAGCGATGA
AACGTTTCAGTTTGCTCATGAAACGGTGTACAAGGGTGACACTATCCATA
TCACAGCTCACGTTTTTCATGCCATACGAAGTCGATGAACCATTCATCAG
CCGGACAGATTGCATACGGCGAAAATCCTTGGCTTATTTTCTCTCTTTA
UFO04039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13704-RA | 682 | CG13704-RA | 98..505 | 9..416 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4900415..4900692 | 139..416 | 1390 | 100 | Plus |
| 3L | 28110227 | 3L | 4900276..4900360 | 54..138 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 4898997..4899042 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:31 has no hits.
UFO04039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:35 Download gff for
UFO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13704-RA | 90..505 | 1..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:33 Download gff for
UFO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13704-RA | 90..505 | 1..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:37 Download gff for
UFO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13704-RA | 90..505 | 1..416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:37 Download gff for
UFO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4900415..4900692 | 139..416 | 100 | == | Plus |
| 3L | 4898989..4899042 | 1..54 | 92 | -> | Plus |
| 3L | 4900277..4900360 | 55..138 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:33 Download gff for
UFO04039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4898989..4899042 | 1..54 | 92 | -> | Plus |
| arm_3L | 4900277..4900360 | 55..138 | 100 | -> | Plus |
| arm_3L | 4900415..4900692 | 139..416 | 100 | == | Plus |
