UFO04041.5prime Sequence
1140 bp (1024 high quality bases) assembled on 2009-04-08
> UFO04041.5prime
CAGTCGACATGGAACAGCTATTGGCCCAATTACACACTTGCAGTGAGCTG
ATTGCAGAGGGCTACAGCAGCACCGGCAACATTGGCTGGCTGAACGAGTT
CTGCGCCACTTTCCTGGACTTCGCCAGCGATCTGAAGGCTAGGCTGCCGG
AGGTGGCGCCCAGTGGCGCAAACCTTGATGTGGAGACCATCTTCCTGTGC
CTCACCCAGGTGGTAACCTGCATCACCCACCTAGAGCGGACCATCAGCAT
GGAGGCACCGCATATGACCAGGCAGCACTTCCTCGACCGCTTGGACTGGT
GCTTGCGGCGACTGCTCGTCTCCTTGACGCAACTGGAAGGCAACGTGACC
CCAGTCAAGAACCTAGAGGATCACTCCTTCGTTGAGCTCATGGACCTGGC
TCTGGACCACTTGGATGACTACATGGAGAAGCTGGCCCAGCAGAGAAACA
ACTCGCTGCACATTCTAGAAGAGAGCTTCACGGAAGACACCTACCAGCTG
GCCAGCATAGTTAATCACATCGTTCGCCACGCCCTGGCCTTTGCCAATGT
GGCCATTCATTCGGACAAGAAGGCTTTGACGGCTTTGTGCGAGACCTTGC
TCGCCGAATGTGCCACTTTCCACGAGGAGGCGGGCGAGCCCAACAGTGGT
CATCGGAAGCTGGAGGCCCTCTCCCTGGAACGTGCCCTCTATGCCCTGGA
ATCCTTTCTCAATGAGGCGCTGCTGCACTTGCTGTTCGTCAGTCTGATAG
ATCTGGAAAACGCTTCGGTGGAGAAGCTAAAGGATGCACTGCAAAGGGAT
CCTGCGGGAGCTCAGGAGCTAATCTCCGCATTCGACACGAACATGGATCG
CATTCAGCAGATTGGGGTTCTGGCCATAGCCTTCTCGCAGACATCAAAAC
GAAGACGATTGTCAAGAGCTGCCTGGCCTCACTGAATCCCTGATGCGTGC
ATTGTGCCCGCTCCTCAGCTGCAAGAGTCCACTTCATCCGCACCACCCCG
CCGGAGTCTGCAGGACATTTTAACCAGAGCTGCTGAATCTTTAGAACGTC
ATCCGAAATTCATCGATAGCCTGCCTCCCTTGATTCAACACCACCCTGGC
CTTGCTTGGCCGAAAAGATCCCGTACAGTACACAAACCCC
UFO04041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 1490..2616 | 8..1132 | 4980 | 97 | Plus |
| Sry-alpha-RB | 3353 | CG17957-RB | 1543..2669 | 8..1132 | 4980 | 97 | Plus |
| Sry-alpha-RA | 1855 | CG17957-RA | 45..1171 | 8..1132 | 4980 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30041261..30042249 | 8..993 | 4735 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:41 has no hits.
UFO04041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:55 Download gff for
UFO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 44..1137 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:38 Download gff for
UFO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 42..1135 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:41 Download gff for
UFO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 42..1135 | 1..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:41 Download gff for
UFO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30041258..30042351 | 1..1095 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:38 Download gff for
UFO04041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25866980..25868073 | 1..1095 | 97 | | Plus |
