UFO04043.5prime Sequence
1147 bp (1043 high quality bases) assembled on 2009-04-08
> UFO04043.5prime
CAGTCGACATGTACAAGAATCTGGAGGAGCACAACCGGCTGGTTAACAAA
TACCTAAAGATATTCTTCGTCGTGTCGCTCTACTGGTGCACCTCGATATT
GACGGTATTCGTAAATAAGCACCTGCTGAGCAGCGATACAGTAAACCTGG
GAGCTCCGCTCTTTATGTCCTGGTTCCAATGCGTGGTTTCCACAGTGATA
TGTTTTGTGGCAAGTCGGCTGAGCAGGAAGTACCCCTCGGTATTTACGTT
TCCCGAGGGAAATCCACTGGACATCGACACCTTCCGCAAGATCCTGCCTC
TATCTGTGCTCTATACCCTGATGATTGGGGCCAACAACCTGTCGCTGTCC
TACGTCACAGTGGCCTTCTACTACATCGGTCGCTCCCTAACAACCGTGTT
TAGTGTGGTCCTCACTTACGTGATTCTACGCCAACGAACCAGCTTCAAGT
GCCTGCTGTGTTGTGGCGCTATTGTCGTTGGATTCTGGCTGGGTGTGGAC
CAAGAAAGCCTGACGGAGGTCTTCTCCTGGCGGGGAACCATCTTTGGAGT
GCTTAGTTCGCTTGCTTTGGCCATGTTTTCTATTCAGACGAAGAAATCAT
TGGGTTATGTCAACCAGGAGGTATGGCTGCTTAGCTACTACAATAATCTC
TACTCCACGTTGCTCTTCCTGCCCCTGATCATCATCAATGGCGAGCTGGA
GAGCATTATCACGTATCCGCACCTGTGGGCTTCTTGGTTCTGGGCCGCGA
TGACGCTTAGTGGCCTTTGTGGCTTTGCCATTGGATTTGTCACTGCGCTG
GAAATCAAGGTCACATCCGCCCTGACGCATAATATCTCGGGAACGGCCAA
GGCCTGCGCTCAAACGGTGATCGCCACTCAGTACTACCATGACGTTCGAT
CGGCTCTCTGGTGACCTCCAATGTGGTGGTCCTGGTGCCAGCGCCGCCTA
CACCCGTGTCAAGCAGCTGGAGAGATGCGCCAGCACCAACACGCAGCACC
GCCACCCAGAAGCCGCAGGCTTTCTAGAACATTCGGTTGGCGCCGCGACC
CAGGTAAGTGTCATAATCAAATCATATCTATAATCATAATCCCAACTTAA
GCCTAAGAGATTCTTGTCATGACTAGTGCTGGATTCCCCACAATAAA
UFO04043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1225 | CG9620-RA | 95..1106 | 5..1012 | 4945 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8303063..8303789 | 811..85 | 3635 | 100 | Minus |
| 3R | 32079331 | 3R | 8302805..8303013 | 1012..808 | 845 | 98.1 | Minus |
| 3R | 32079331 | 3R | 8303846..8303929 | 88..5 | 405 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:30 has no hits.
UFO04043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:53 Download gff for
UFO04043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 78..1094 | 1..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:32 Download gff for
UFO04043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 90..1106 | 1..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:05 Download gff for
UFO04043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 90..1106 | 1..1012 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:05 Download gff for
UFO04043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8302805..8303011 | 810..1012 | 98 | <- | Minus |
| 3R | 8303065..8303788 | 86..809 | 100 | <- | Minus |
| 3R | 8303849..8303930 | 1..85 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:32 Download gff for
UFO04043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4128527..4128733 | 810..1012 | 98 | <- | Minus |
| arm_3R | 4128787..4129510 | 86..809 | 100 | <- | Minus |
| arm_3R | 4129571..4129652 | 1..85 | 95 | | Minus |
