UFO04044.5prime Sequence
1177 bp (1074 high quality bases) assembled on 2009-04-08
> UFO04044.5prime
CAGTCGACATGAACGCCAGCCTCATCTATGAGATACTTATGTATCTGAAC
TCGTTCTACTTTGGCATGTACGCCGCCTTCGAAGTGGGCGTGGGCGTTCT
TAAGGCGATTAATCTAAACTACGGCGAGAACGCGTTGTCCCGGGAGGCCA
GCATCCTGCTCTCACTGTGCATCATCGAGACCGTGCGCATTGTCTTCGGG
CGGAAGAGCAGTCTAAGCGATCGTGGCTGGCAAGCAACCGCATCCGTAAT
ATTAACACTGCCCAGTCTTGCTATTGTTATCTACTTGTGTTGTTTTCAAA
CCTTTGTTCTCAAACTCGAAATTATTCTGAGTGCCTTAATGATCACCCTA
CAAGGTGCTGAACTAGTCTACGCCAGCATATTCATTTGTACAATGTGTCG
CCCCGTCACATACACCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACC
CTTTAGGGAAATAGCCAGGTTTCACCGTAACCCGCCACATCTTGCGATAT
ATGTGTAGAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAA
ACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAGGTGAACACTATCCCA
TATCACCAGCCTCACGTCTTTCATTGCATACGAAATTCCCGATGACCATT
CATCAGGGCGGCCAGAATGTGAATACGCGATAAACTTGCTATTTCCTACG
GCCTTAAGCGTATATCCACCGTGAACG
UFO04044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8116-RC | 1826 | CG8116-RC | 550..958 | 8..416 | 2045 | 100 | Plus |
| CG8116-RB | 2812 | CG8116-RB | 555..963 | 8..416 | 2045 | 100 | Plus |
| CG8116-RA | 1831 | CG8116-RA | 555..963 | 8..416 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8717124..8717342 | 8..226 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 8717848..8718039 | 225..416 | 960 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 977..1037 | 133 | 72.6 | Plus |
UFO04044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:52 Download gff for
UFO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RA | 557..976 | 1..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:28 Download gff for
UFO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RA | 548..967 | 1..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:29 Download gff for
UFO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8116-RA | 548..967 | 1..422 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:29 Download gff for
UFO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8717117..8717341 | 1..225 | 98 | -> | Plus |
| 3R | 8717849..8718039 | 226..416 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:28 Download gff for
UFO04044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4542839..4543063 | 1..225 | 98 | -> | Plus |
| arm_3R | 4543571..4543761 | 226..416 | 100 | == | Plus |
