UFO04046.5prime Sequence
1173 bp (1066 high quality bases) assembled on 2009-04-08
> UFO04046.5prime
CAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGCTGCACTTG
CTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACTCAACCCCA
ACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACATTTCGATA
GCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCGACTTTGAT
TCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAGCGTTATCT
TCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGGCAAGAACA
ATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCTTCCGTGCC
AATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAATGCCGTCTT
TTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGACTGCTCTGG
ATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGTTCTGCACT
GCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATGCTTTTCAA
AATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCGGCATATGC
CGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCCATTGTCCA
TTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACCTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGAAATGGAAGCAATCACAA
ACGGCATGATGAACCTGAATTCGCCAGCGGCATCAGCACCTTGTCGCTTG
CGTATAAATATTTGCCCATGTGAAAACGGGGGGCGAAGAGTTTGTTCAGT
GGCCACGTTTAATCAAAACTGGGTGACTCACAGGAATTGCCTGAACGAAA
ACAATTTCTCCAATAACCCTTTT
UFO04046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-RA | 1279 | CG17780-RA | 167..849 | 7..689 | 3415 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 167..731 | 7..571 | 2825 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 1086..1203 | 572..689 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24384608..24384886 | 285..7 | 1365 | 99.3 | Minus |
3R | 32079331 | 3R | 24384362..24384538 | 454..278 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24383350..24383468 | 689..571 | 595 | 100 | Minus |
3R | 32079331 | 3R | 24384147..24384264 | 571..454 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2388 | 63..26 | 118 | 78.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6893 | 63..26 | 118 | 78.9 | Minus |
UFO04046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:56 Download gff for
UFO04046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 158..849 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:14 Download gff for
UFO04046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 162..853 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:51 Download gff for
UFO04046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 162..853 | 1..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:51 Download gff for
UFO04046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24384362..24384537 | 279..454 | 100 | <- | Minus |
3R | 24384615..24384891 | 1..278 | 99 | | Minus |
3R | 24383346..24383467 | 572..695 | 97 | <- | Minus |
3R | 24384147..24384263 | 455..571 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:14 Download gff for
UFO04046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20209068..20209189 | 572..695 | 97 | <- | Minus |
arm_3R | 20209869..20209985 | 455..571 | 100 | <- | Minus |
arm_3R | 20210084..20210259 | 279..454 | 100 | <- | Minus |
arm_3R | 20210337..20210613 | 1..278 | 99 | | Minus |