UFO04047.5prime Sequence
1136 bp (1009 high quality bases) assembled on 2010-09-10
> UFO04047.5prime
CAGTCGACATGGGTAATTGCTTAAAAATTAGCACTTCAGATGACATTTCA
CTTTTACGCGGCAATGACAGTCAAATCAGCGGGACACAGCCAGTGTATCA
TCAGGGAGAGCATTATCAACGAGAATTGTACCCTTCCACGTCGTCTTCGA
CAACGCTAACACCATCTTCTAACAATCGTCAACTTTCCGATGAAAATCAA
GTGAAAATTGCAAAGCGAATTGGATTAATGCAGTACTTGCCAATAGGAAC
ATACGACGGGAGCTCAAAGAAAGCACGAGAATGTGTTATCTGCATGGCTG
AATTTTGTGTTAATGAAGCCGTACGTTATCTACCTTGCATGCATATTTAT
CATGTTAATTGTATAGATGATTGGTTGTTGAGAAGTCTAACTTGTCCCAG
TTGTTTAGAGCCTGTTGATGCTGCCTTGCTGACGAGTTATGAATCGACAG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
GGCTGAGACGAAAACATATTCTCAATAAACCCTTTAAGGAAATAGCCAGG
TTTTCACGTACACGCTCAATCTTGCGAATATATGTGTAGAAACTGCGGAA
ATCGTCGTGGTATTCACTCCAGAAGCGATGAAACGTTTCAGTTTGCTTAT
GGAAACGGTGTAAACAGGGGGAACCTATCCATAACCACCAGCCTCCCGTC
TTCATTGCATACGAATTCGGATGAACTTCATAGGCC
UFO04047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-RA | 2311 | CG32850-RA | 282..722 | 9..449 | 2205 | 100 | Plus |
| CG32850-RB | 3965 | CG32850-RB | 60..497 | 9..449 | 2150 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 319445..319796 | 98..449 | 1745 | 99.7 | Plus |
| 4 | 1348131 | 4 | 316417..316509 | 9..101 | 465 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 6645..6689 | 1021..1066 | 110 | 73.9 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 6539..6583 | 1021..1066 | 110 | 73.9 | Plus |
UFO04047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:38 Download gff for
UFO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 253..706 | 1..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:37 Download gff for
UFO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 276..729 | 1..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:40 Download gff for
UFO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 276..729 | 1..458 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:40 Download gff for
UFO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 316411..316509 | 1..101 | 97 | -> | Plus |
| 4 | 319449..319796 | 102..449 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:37 Download gff for
UFO04047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 337037..337135 | 1..101 | 97 | -> | Plus |
| arm_4 | 340075..340422 | 102..449 | 100 | == | Plus |
