UFO04050.5prime Sequence
1257 bp (930 high quality bases) assembled on 2010-09-10
> UFO04050.5prime
CAGTCGACATGGCACAAATGGACATCGAATTGAAGAAGGCCTTCACCGAG
ATGCAGATCAATAAGCTGGAGACGACCAAGAAGATCCACATGATCGACAT
GAAGTGCGACATGGTCAAGACAGGCAAACAAAAGTACCAGCTGACAGAAA
AGGGCACCAGCAGCTTGGCCGACGACACAAGAGTTTACCAGTCCGTGGGT
CGCATGTTCCTGCTTACCGATGTACAGAATATGCGCGAGGACCTGAAGGC
TAGGCAGGAGAAATGCGACAAAGCGATAGAACTGCTGGAGAAGAAGAAGG
AGTTCTTGCAGAAGTCCCTTAAGAGCCAGGAAGACGGTCTGCGCGAGTTG
GTGCAGCAGCGCAAGGAAGCCGATCAGACTGCGAAAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAACG
GCATGATGAACCCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GCCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCCTGAA
AACAAAAAAACTATTTCTTCAATAAACCTCTTAGGGAAATGGGCCAGGTT
TTTCACCGGTAACACGCCACATCTTGCGAATTATATGTGTAGAAACTGCC
GGAAATCGTCGTGGTTATTCAACTCCAGAGCGATGAAAACGTTTTAGGTT
TGGCTCATGGAAAACGGGTGTTACAAGGTGGAACACTATTCCCATTATCA
ACCAAGCTCTCACCGGTTCTTTCCATTGGCCCATACGAAATTCCGGGATG
AGACCATTTCCTCCAGGCGCGGGCAGAAATGGGCAAATAAAAGGGCCGGG
ATATAAAACCTTGTGTGCCCTTATATTTTTCTCTTTAACGGTCTTTAAAG
GCCCAGGTTATATATATATTCCCGCACAACCCGCTCGTCGTGTGAACCGG
GCTCTGG
UFO04050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13993-RB | 575 | CG13993-RB | 123..500 | 9..386 | 1890 | 100 | Plus |
| CG13993-RA | 595 | CG13993-RA | 143..520 | 9..386 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6069557..6069763 | 180..386 | 1035 | 100 | Plus |
| 2L | 23513712 | 2L | 6069345..6069489 | 37..181 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:25 has no hits.
UFO04050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:34 Download gff for
UFO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13993-RA | 111..496 | 1..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:29 Download gff for
UFO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13993-RA | 135..520 | 1..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:33 Download gff for
UFO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13993-RA | 135..520 | 1..386 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:33 Download gff for
UFO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6069347..6069489 | 39..181 | 100 | -> | Plus |
| 2L | 6069559..6069763 | 182..386 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:29 Download gff for
UFO04050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6069347..6069489 | 39..181 | 100 | -> | Plus |
| arm_2L | 6069559..6069763 | 182..386 | 100 | == | Plus |
