UFO04052.5prime Sequence
1133 bp (1000 high quality bases) assembled on 2009-04-08
> UFO04052.5prime
CAGTCGACATGAATGTATCAATTCCGGTGCTATTTGTGGCCCTCATCTGT
CTGGCAGCTGCGTCGGCGTTTCCTCAACTGAGGCAGCGCAACGAGAAGCA
GGTTCAAACCGGCGATGATGATTTGCCTTCCAAGGGCGCCACTATCGAGG
AAGTAGTGGTGGAATCAGCCTTGTACATCAAACCGAAGTCTAATCCGCAG
GTGCGTCGCGTCCGTTCGGTCCTGGATCAAATATCCGGAATCCAGGCCGC
TCACAAGAGGGTGAAGCGTCAGTTTGGGCGACAATTTGGTGGTCAGTATG
CTGGAAATCCCGGCTTCGGTGGCGGATTCGGTGGAGAGCCTGGTTTTGGA
GGTGGATTCGGCGGTAATCAAGGATTTGGAGGCAACCAGGGATTCGGAGG
TAATCAGGGTTTCGGCGGTAATCAGGAATTCGGCGGTAACCCAGGATTCG
GAGGAAATCCCGGATTCGGCGGTAATCAAGGTGGAAAAGTTCAGGCAGGT
ACATCGGCCGGCGCTGGGGGAACCAAAGCGGGTGTTGATGTTGGTGCCGG
ACCAGATGGCGGCAATGCCAATGCCAACGTCGAGTTAAATCCGCTGGGAC
CACTCGGACCCAGTGGTTACAACCAGGAGCAGGCCGCATCCAACGGAGCT
GCCCACAGCAACTACAACAATGGACTCAACTCAGGATCCTCGGCCGCCAG
TGGGCAGGCTCAGGGCTTCCAGTCGCAGAGTGCCAATGGATCATTCGGTG
CCTCCTCCGCAAGCACGGCCACTCAGTCCCAGAACACCAGCCCCTTTGGA
TCCAATAATGCGGCAGGTGCTTCGCTGAGTCAGTTTACCATCTTCCCAAT
GGACAGACATAAACTTTAGCTCCCACGAACAGCTTCGCTAATGAGGAGCC
AATCGTGCAGTAGCCATGGATCGCCAGTTTCTGTCAGCCGCGCAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAATCATATCAT
ATCATATCATATCCAACCTAGCCTAAGAAATTCCTGTCATGACTATGCTT
GATTCCTACCAATAAAACGCCCGCCGCCAACGAACGTCTGACAATCGATG
ATCTGAGTCTTACCTGAATTATCACGGATCCAG
UFO04052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17032-RB | 1127 | CG17032-RB | 84..1023 | 5..941 | 4550 | 99.3 | Plus |
| CG17032-RA | 1463 | CG17032-RA | 420..1359 | 5..941 | 4550 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15959688..15960505 | 127..941 | 3830 | 99.3 | Plus |
| 3L | 28110227 | 3L | 15959262..15959383 | 5..126 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:10 has no hits.
UFO04052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:50 Download gff for
UFO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17032-RA | 418..1359 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:04 Download gff for
UFO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17032-RA | 418..1359 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:24 Download gff for
UFO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17032-RA | 418..1359 | 1..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:24 Download gff for
UFO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15959260..15959383 | 1..126 | 97 | -> | Plus |
| 3L | 15959688..15960505 | 127..941 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:04 Download gff for
UFO04052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15952360..15952483 | 1..126 | 97 | -> | Plus |
| arm_3L | 15952788..15953605 | 127..941 | 99 | == | Plus |
