UFO04053.5prime Sequence
1149 bp (950 high quality bases) assembled on 2009-04-08
> UFO04053.5prime
CAGTCGACATGTTTAAGCTAACGATGCTGATGGGCCTGGCCCTCATCCTG
GCCCCATCAACGATCCAGGCCAAGTCCCTGTGCCGCAGCAGCGGCTACTT
CGCCCTAGTGGATAACACACCCGACTTCTATGCCTGCCAGTCAACCGCCT
ACGGTGGCTACTCTCTGCGCTTCCTGCGCTGCCCCGCTGGTCTGGTCTTC
AGCTCCTCGATGGCCCAGTGCGTTCAGTCCATTGCCGCTTTCGAGGCTCG
TGATGATAGCAACATCGAGAACCCTACCATTCCGCCGAGCAACCTGGATG
AGAGCACCACTGAGAAACCAGCCACTGAGGCACCTGGCACAACCGAGAAA
GTAACCACTGCGGCACCTGGCACCACTGAGAAAGTAACCACTGAGGCACC
TGGCACCACTGAGAAAATAACCACTGAGGCACCTGGAACCACCGAGAAAA
TAACCACTGAGGCACCTGGAACCACCGAGAAAATAACCACTGAGGCACCT
GGAACCACCGAGAAAATAACCACTGAGGCTCCTGGAACCACTGAAAAGCC
CGCCACCGATGCTCCCGGCACCACCGAAAAACCAGCCACGGATGCACCTG
GAACCACTGAGAAATCAGAAACTACTGATGCTCCCGGCACCACGGATAAA
ATCAGATACTGATGCTCCCATTACCGACGAGCCGTCAACCGCTGAGACCA
GTACCGATGAGCCCAACACCGAGACCACTGAAAGCGGCGAAGAGACCACC
ATCGAGGACAATGTGTGCGCCACCACCGGACTATTCCCGACGGGCAGCTG
CACGCACTTCATCGTCTGCAGCTACGCCGAGGGGACGAGCTGACGGCCTA
CACGAGAAGTGTCCTGGCGAGATGCAGTTCGATCCCTTCACCAGCGTTTG
CTCAGCGTCCTACGACTGCACTGCAGAAACGCAAGCTTTTCTAGACCATT
TCGTTGGCCGCGCGGGCCCAGGTTAGGTGTCATAATCATAATCATAATCC
ATAATCATATCCACAACTAGCCCTAGGAGATCCTGGTATATGACCTAGTG
CTCTGGATTCCTCACCAATAAAAAACGCCCGGCGGGCCAACCGGAACGTC
TGAACAAATTCGGATGGAATTCTGAGAGTTCATTACATCGGGATTCTAT
UFO04053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Muc18B-RB | 1146 | CG7876-RB | 45..967 | 5..926 | 4485 | 99.2 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 45..967 | 5..926 | 4485 | 99.2 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 377..708 | 304..635 | 950 | 86 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 377..708 | 304..635 | 950 | 86 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 344..675 | 337..669 | 930 | 85.7 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 344..675 | 337..669 | 930 | 85.7 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 410..704 | 304..595 | 760 | 84.1 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 410..704 | 304..595 | 760 | 84.1 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 344..635 | 370..665 | 755 | 84.1 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 344..635 | 370..665 | 755 | 84.1 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 443..708 | 304..566 | 590 | 82 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 443..708 | 304..566 | 590 | 82 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 344..581 | 403..643 | 585 | 83.4 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 344..581 | 403..643 | 585 | 83.4 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 346..557 | 438..652 | 425 | 80.5 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 346..557 | 438..652 | 425 | 80.5 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 478..654 | 306..482 | 420 | 82.5 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 478..654 | 306..482 | 420 | 82.5 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 346..524 | 471..652 | 305 | 79.2 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 346..524 | 471..652 | 305 | 79.2 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 511..654 | 306..449 | 300 | 81.4 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 511..654 | 306..449 | 300 | 81.4 | Plus |
| Muc18B-RB | 1146 | CG7876-RB | 346..458 | 537..652 | 180 | 77.6 | Plus |
| Muc18B-RA | 1068 | CG7876-RA | 346..458 | 537..652 | 180 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19215559..19216481 | 5..926 | 4410 | 99.2 | Plus |
| X | 23542271 | X | 19215891..19216213 | 304..623 | 905 | 86.1 | Plus |
| X | 23542271 | X | 19215858..19216139 | 337..618 | 900 | 87.9 | Plus |
| X | 23542271 | X | 19215924..19216218 | 304..595 | 735 | 84.1 | Plus |
| X | 23542271 | X | 19215858..19216098 | 370..610 | 725 | 86.7 | Plus |
| X | 23542271 | X | 19215858..19216069 | 403..614 | 580 | 84.9 | Plus |
| X | 23542271 | X | 19215957..19216168 | 304..515 | 580 | 84.9 | Plus |
| X | 23542271 | X | 19215860..19216036 | 438..614 | 420 | 82.5 | Plus |
| X | 23542271 | X | 19215992..19216168 | 306..482 | 420 | 82.5 | Plus |
| X | 23542271 | X | 19215860..19216003 | 471..614 | 300 | 80.6 | Plus |
| X | 23542271 | X | 19216025..19216168 | 306..449 | 300 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:29 has no hits.
UFO04053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:49 Download gff for
UFO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7876-RA | 39..977 | 1..940 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:43 Download gff for
UFO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Muc18B-RA | 41..979 | 1..940 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:00 Download gff for
UFO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Muc18B-RA | 41..979 | 1..940 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:00 Download gff for
UFO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19215555..19216493 | 1..940 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:43 Download gff for
UFO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19109588..19110526 | 1..940 | 98 | == | Plus |
