UFO04054.5prime Sequence
1109 bp (1005 high quality bases) assembled on 2009-04-08
> UFO04054.5prime
CAGTCGACATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGGCGAGGCGG
GCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTTCATGGGGA
CAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCGGAACGCCA
CTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCAGCTGCCGC
GAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACCGTGGTGGT
CACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACACTCTGGGCG
TCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAGGAAAGACG
GTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATCACGGGCGG
TGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTACAAGGGCG
ACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAACTGTGAAACTCACCCAGGGATGGCTGAGACGAAAA
CATATTCTCATAACCCTTAGGAATAGCCAGTTCACCGTACACGCCCAATC
TGCGAATTTATTGTGTAGAACTGCGAAATCGTCTGTATCACTCCAGAGCG
ATGAAACGTTCAGTTGCTCAGAAACGGTACAAGCGAACTATCCATCCGTC
ACGCTCATG
UFO04054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5292-RB | 1855 | CG5292-RB | 114..593 | 9..488 | 2400 | 100 | Plus |
| CG5292-RA | 1191 | CG5292-RA | 114..593 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17151974..17152453 | 9..488 | 2400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:53:17 has no hits.
UFO04054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:48 Download gff for
UFO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5292-RA | 101..588 | 1..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:20 Download gff for
UFO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5292-RA | 106..593 | 1..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:56 Download gff for
UFO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5292-RA | 106..593 | 1..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:56 Download gff for
UFO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17151966..17152453 | 1..488 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:20 Download gff for
UFO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12977688..12978175 | 1..488 | 99 | == | Plus |
