UFO04057.5prime Sequence
1105 bp (933 high quality bases) assembled on 2009-04-08
> UFO04057.5prime
CAGTCTACATGCGTGAGTACAAAATCGTGGTCCTTGGAAGCGGCGGCGTG
GGCAAATCCGCGCTGACAGTCCAGTTTGTCCAGTGCATCTTCGTGGAGAA
GTACGATCCCACCATCGAGGACAGTTACAGGAAGCAGGTGGAGGTGGACG
GACAGCAGTGCATGCTGGAGATCCTGGACACGGCGGGTACGGAGCAGTTC
ACGGCCATGCGGGATTTGTACATGAAGAACGGCCAGGGATTCGTGCTGGT
CTACTCGATCACGGCGCAATCGACGTTTAACGATCTGCAGGACCTGCGCG
AGCAGATACTCCGGGTGAAGGACACGGACGATGTGCCCATGGTGCTCGTG
GGCAACAAGTGCGACCTCGAAGAGGAGCGCGTCGTCGGCAAGGAGCTGGG
CAAGAACCTGGCCACCCAGTTCAACTGCGCCTTCATGGAGACCTCAGCCA
AAGCCAAAGTGAATGTGAACGATATTTTCTACGACCTGGTCCGGCAGATC
AACAAGAAGTCGCCCGAGAAGAAACAGAAGAAGCCGAAAAAGTCCCTATG
TGTTCTGCTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCACAGGAGTCCAGCGAGCTCGATATCAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCCGCCTTGCGTATATATTGGCCATGGTGAAAACCGGGGCGAG
AGCTGTCATATTGGCCACGTTTAAATCCAAACTGGTGAAACTCCACCCAG
GGATGCCTGAAACGAAAACAATTCTCAATAACCCTTAGGAATAGGCCAGT
TTCACCGTTACCCGCCACATCTTGCAATATATGTGTAGAAACTTGCGAAT
CGTCT
UFO04057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R-RC | 2702 | CG1956-RC | 605..1157 | 8..560 | 2765 | 100 | Plus |
| R-RB | 2872 | CG1956-RB | 775..1327 | 8..560 | 2765 | 100 | Plus |
| R-RA | 2741 | CG1956-RA | 644..1196 | 8..560 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1860660..1861212 | 560..8 | 2765 | 100 | Minus |
| 3R | 32079331 | 3R | 9512159..9512282 | 141..18 | 200 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:20 has no hits.
UFO04057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:47 Download gff for
UFO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| R-RA | 632..1199 | 1..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:23 Download gff for
UFO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| R-RA | 637..1204 | 1..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:58 Download gff for
UFO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| R-RA | 637..1204 | 1..568 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:58 Download gff for
UFO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1860652..1861219 | 1..568 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:23 Download gff for
UFO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1860652..1861219 | 1..568 | 98 | | Minus |
