UFO04058.5prime Sequence
1165 bp (939 high quality bases) assembled on 2010-09-10
> UFO04058.5prime
CAGTCGACATGGAGTGCAGAGCTGTTCCCATTCTACCCACCTATTCTCAA
GCCTGTGGTACTCCTATGCCCCGGAAAACGTCCCTCTGCCGTACACTCTT
TGATTATGGTCCTCTAAACGATCCGGTGATCATACTCATAACACTGGCCG
TCGTAGTTGGATCCTTTTGCCTGCTCAGCGGATTCATTTTACTGTGCGTT
GTCTCAAAAGCCTGGCAGGATGAGACTTCCGAGGCCATTCTCCTAATGGC
GATTGGCTTCTTCATCACGGCTTTGTCCTGCGTATCGTGGAAATTGACGC
GAGCTCAACGAATTTCCCAGTTAGTGGATGCCCTCAGCGTAGATAACCAA
ACCATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTTCTCAATAACCTCTTTAGGG
AATAGCCAGGTTTTTCACCGTACCACGCCCACATCCTTGCGAATTATATG
TGTAGAAACTGGCCGGAAATTGGTCGTTGGTATTCACTCCAGAGCGATGA
AAGCGTTTCAGTTTGCTTCATGGAAAACGGTGTAACAAGGGTGGAACACT
ATTCCCATATCACCAGCTCACCGTCTTTCATGGCCATACGAAATTCCGGG
ATGGACCATCCTCAAGGCGGGCAAGAATGGTGATTAAGGGCCGGGATAAA
ACTTGGGGCTTTATTTTTTCTTTACGGCTTTAAAAGGGCCCGAATATTCC
CGCCGTGACGGTCTG
UFO04058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42662-RC | 1695 | CG42662-RC | 21..369 | 8..356 | 1745 | 100 | Plus |
| CG42662-RB | 2791 | CG42662-RB | 21..369 | 8..356 | 1745 | 100 | Plus |
| CG30080-RC | 1695 | CG30080-RC | 21..369 | 8..356 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15701379..15701573 | 249..55 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 15701217..15701324 | 356..249 | 540 | 100 | Minus |
| 2R | 25286936 | 2R | 15701629..15701676 | 55..8 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:28:28 has no hits.
UFO04058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:34 Download gff for
UFO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RA | 13..373 | 1..364 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:31 Download gff for
UFO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42662-RC | 15..375 | 1..364 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:35 Download gff for
UFO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RC | 15..375 | 1..364 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:35 Download gff for
UFO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15701214..15701323 | 250..361 | 97 | <- | Minus |
| 2R | 15701379..15701572 | 56..249 | 100 | <- | Minus |
| 2R | 15701629..15701681 | 1..55 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:31 Download gff for
UFO04058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11588719..11588828 | 250..361 | 97 | <- | Minus |
| arm_2R | 11588884..11589077 | 56..249 | 100 | <- | Minus |
| arm_2R | 11589134..11589186 | 1..55 | 94 | | Minus |
