UFO04061.5prime Sequence
1102 bp (1008 high quality bases) assembled on 2010-09-10
> UFO04061.5prime
CAGTCGACATGTTGAGCATCACGGCCCGTAACCTGGCAAGCGCCCTCCGC
AGCAGCCTCGTCGGCACATCGTCGCGCGTGGCCGCCGTGCGCTGTCTGCA
CGGAACCGAGGAATCGGCGGAGGAGTTCGACAAGCGCTACGAGAAGTACT
TCAGCCGTGAGGGCATCGATGGCTGGGAGATCCGCAAGGGCATGAACGAT
CTGCTGGGCATGGATCTGGTGCCCAGCCCCAAGATCATCGAGGCCGGTCT
GCGTGCCAGCCGTCGCGTCAACGACATTGCACTGGCCATCAGGTGGCTGG
AGGGATGCAAGGACAAGTGCGGCGACCAAAAGGCCACCCTCTATCCCTAC
TTGCTGGAGAAGATCACCCCCACACTGCAGGAGCTGGGCATCCCAACCAT
CGAGGAACTGGGCTACGACAAGCCCGAATTGGCCCTGAAGTCCGTGTACG
ATGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGATTGGCTGAGACGAAAAACATATTCTCAATAACCCTTTAGGAAATA
GCCAGGTTTTCCACCGGTAACCCCGCCACATCTTGCGAATAATATTGTGT
AGAAACTGCCGAATTCGTCTGATATCACTCCAGAGCGATGAAACGTTTCA
GTTTGCTCATGAAACGGTGTAACAGGGTAAACCTAATCATATCACCAGCT
CA
UFO04061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVa-RC | 635 | CG14724-RC | 46..494 | 7..455 | 2245 | 100 | Plus |
| CoVa-RA | 730 | CG14724-RA | 141..589 | 7..455 | 2245 | 100 | Plus |
| CoVa-RB | 701 | CG14724-RB | 113..560 | 8..455 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11819711..11820158 | 8..455 | 2240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:17 has no hits.
UFO04061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:32 Download gff for
UFO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 134..594 | 1..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:26 Download gff for
UFO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 134..594 | 1..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:28 Download gff for
UFO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 134..594 | 1..461 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-26 15:31:28 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-03 19:33:26 has no hits.
