UFO04065.5prime Sequence
1117 bp (1010 high quality bases) assembled on 2009-04-08
> UFO04065.5prime
CAGTCGACATGTCTGTGCTGCGTGCACTGATGTTTCTGGCCTTTGGTGCC
ACCGTGGCGCTGGCCCAACGTCGCCTGGCTCTGCCCGATCCGAGGAGTTG
CGCCAACCGGGTGCGCCATGCCAGCTATCGGGATGCCAGGGGCGTGTCCC
ACTCGTACTTCTTCAGCTGGGAGCATGCTCCTACCCGCAGCCTGGAGGTG
GATTGGCTGGATGCGAGGAACATCTGCCGCAGGCACTGCATGGATGCCGT
TTCCCTGGAGACGCCACAGGAGAATGACTTTGTGAAGCAGAGGATTGCCA
GGGGCAATGTGCGATACATTTGGACCTCGGGCAGGAAGTGCAACTTCGCT
GGCTGCGACAGGCCCGATCTGCAGCCTCCCAATGAGAACGGTTGGTTCTG
GTCGGGATCGGGGGCAAAGATTGGACCCACTTCGCAGAGGAACACCGGCG
ATTGGTCTTCAACGGGCGGATACCAACAGCCGCAGCCCGATAACCGGGAG
GCCGCGCAGGGCAACGACGAGAGCTGCCTGTCCATCCTGAACAACTTCTA
CAACGATGGCATCAAGTGGCACGACGTGGCCTGCCATCACATCAAGCCAT
TTGTGTGCGAGGACTCCGATGAGCTGTTGAACTTCGTCCGCTCCCGGAAC
CCCAATGTCCGCTTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCT
GCCGACATGGAAGCCATCACAACGGCATGATGACCTGAATCGCAGCGGCA
TCAGCACCTTGTCGCCTTGCTATAATTTTGCCCATGATGAAACGGGGGCG
AAGAGTTGTCTAATGCCACGTTTAAATCAACCTGGTGACCTACCAGGGAA
TGCCTGAAACGAACATT
UFO04065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6055-RB | 1034 | CG6055-RB | 87..743 | 9..665 | 3285 | 100 | Plus |
| CG6055-RA | 1087 | CG6055-RA | 140..796 | 9..665 | 3285 | 100 | Plus |
| CG4115-RA | 1115 | CG4115-RA | 307..376 | 193..262 | 185 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7471546..7472202 | 9..665 | 3285 | 100 | Plus |
| 3R | 32079331 | 3R | 12360375..12360444 | 193..262 | 185 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:02 has no hits.
UFO04065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:45 Download gff for
UFO04065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6055-RA | 137..798 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:33 Download gff for
UFO04065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6055-RA | 140..801 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:44 Download gff for
UFO04065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6055-RA | 140..801 | 9..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:44 Download gff for
UFO04065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7471546..7472207 | 9..673 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:33 Download gff for
UFO04065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7471546..7472207 | 9..673 | 99 | == | Plus |
