UFO04066.5prime Sequence
1153 bp (1054 high quality bases) assembled on 2010-09-10
> UFO04066.5prime
CAGTCGACATGGCAAGCATAGTACTTATAGCTTGCTTGGCTATATTGGGA
TTAATTATTACAATCGCTCTTTTTCTGGCTGGAGGATACTTGTGGTGGAG
GCATAAAAGATCACAGTTACAGTTTATTGAACCAAATGAAGATGAGGAAT
CTAGTAGTTATAGTCTTCGGGCTGCTCAGGATATTGTTGACTCTGGTAAT
CCACCTACAAAACCGCAAGTGCCGGTGGCACATGCTATCACGACTCCTCT
CCAAAATAATATTAACAGGAAATTAAATGGATTTTTAAGTCTTAGAACTC
CTTTGATTGGCGGGTCGGGGGCCTCTCAAACAAAACCGCAAATCATTTCT
TCAGTTGGAAATCCTGGAGATGGGACTACGAAAGATTCTGCAAATAAAAG
TATCTCAATGACAGACATGTATTTGGATAGCACCGATCCAAGTGAAAATG
TTGGGCAAATACATTTCTCCTTGGAGTATGATTTCCAAAACACAACATTA
ATTTTGAAAGTTCTTCAAGGAAAAGAGCTTCCAGCAAAAGATTTGAGTGG
TACTTCCGATCCATATGTTCGTGTAACGCTGTTACCAGATAAAAAGCATA
GATTGGAAACCAAAATAAAACGGCGAACCCTTAATCCACGATGGAATGAA
ACATTTTATTTTGAAGGTTTTCCAATTCAAAAACTTCAATCACGTGTTTT
ACACTTACATGTTTTTGATTACGATCGGTTTTCAAGAGATGACTCCATAG
GGGAAGTATTTCTTCCTTTATGTCAGGTTGACTTTGCTGGAAAACAATCT
TTTTGGAAGGCTTTAAGCCCCCTGCAAAGGATAAATGCGGAGAACTTCTC
TCCTCCCTTTGCTATCACCCGTCGAACTCAATTTTGACTTTAACACTAAT
TTAAGCGAGAAATTTGAAAGCCAAAGATATCAACGGAAAATCTGATCCAT
ACGTAAAGGTGTGGCTACAGTTTGGCGATAAAAGTTTGCAAGCTTTCTAG
ACATTCGTTTGGCGGCGCGGGCCCAGTTAGTGGTCATATCATAATCATAA
TCATATCATAATCACACTAGCTAAGAGATCCTGGTCATGACTAGGGCTGG
ATCTCACAATAAAACCCCGCGCACGGACCTTCTGAACAATCGAGTGGAAT
CTT
UFO04066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RM | 2830 | CG2381-RM | 123..1102 | 6..984 | 4860 | 99.8 | Plus |
| Syt7-RA | 2794 | CG2381-RA | 88..1066 | 7..984 | 4855 | 99.8 | Plus |
| Syt7-RB | 2684 | CG2381-RB | 43..1021 | 7..984 | 4855 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 282434..282738 | 697..393 | 1525 | 100 | Minus |
| 4 | 1348131 | 4 | 305015..305179 | 170..6 | 825 | 100 | Minus |
| 4 | 1348131 | 4 | 281724..281894 | 944..775 | 790 | 98.8 | Minus |
| 4 | 1348131 | 4 | 302386..302527 | 310..169 | 710 | 100 | Minus |
| 4 | 1348131 | 4 | 281946..282028 | 778..696 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 302242..302324 | 392..310 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 280498..280538 | 984..944 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:28:13 has no hits.
UFO04066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:31 Download gff for
UFO04066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 99..1088 | 1..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:24 Download gff for
UFO04066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 37..1028 | 1..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:26 Download gff for
UFO04066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RM | 119..1109 | 1..991 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:26 Download gff for
UFO04066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 281724..281892 | 777..944 | 98 | <- | Minus |
| 4 | 281948..282028 | 696..776 | 100 | <- | Minus |
| 4 | 280498..280537 | 945..984 | 100 | <- | Minus |
| 4 | 282436..282738 | 393..695 | 100 | <- | Minus |
| 4 | 302242..302323 | 311..392 | 100 | <- | Minus |
| 4 | 302386..302526 | 170..310 | 100 | <- | Minus |
| 4 | 305016..305181 | 1..169 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:24 Download gff for
UFO04066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 301124..301163 | 945..984 | 100 | <- | Minus |
| arm_4 | 302350..302518 | 777..944 | 98 | <- | Minus |
| arm_4 | 302574..302654 | 696..776 | 100 | <- | Minus |
| arm_4 | 303062..303364 | 393..695 | 100 | <- | Minus |
| arm_4 | 322868..322949 | 311..392 | 100 | <- | Minus |
| arm_4 | 323012..323152 | 170..310 | 100 | <- | Minus |
| arm_4 | 325642..325807 | 1..169 | 98 | | Minus |
