UFO04068.5prime Sequence
1131 bp (1020 high quality bases) assembled on 2010-09-10
> UFO04068.5prime
CAGTCGACATGAGTGCGATTTCTAATGAAGACATTATTTGGACCATAAAG
AACGGAGAGTTCGATGCTGTGCAAGACGCTTTTCAGAATGATGCACAAAA
GGTGAATGAGGAAATCAAGGGCCGTTTTCCAGTACACTATGCAGCAGATT
TTGGACAACTGAATGTCCTGGAGTTTCTTATAAGCTTAGGAGCAGACATA
AATAGAAAGGACAAACATGGTATTACCCCCATTCTGGCTGCCATTTGGGA
AGGACATACGAGCTGTGTGGAATTACTTCTAAAAATGGGAGCTGATAAAA
ATGGTTCTACTCCAGATGGCCAAAGCTACCTCGAGGCGGCGGAAAAAGAC
GAGATTAAGAAACTCCTTGCAGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACTCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGATATATGTGTAGAACTGCCGGAAATCGTCGTGGTATTCACTTCAGA
GCGATGAAACGTTTCAGTTTGCTCATGAAAACGGTGTACAGGGTGAACAC
TATCCATATCACCAGCTCACGTCTTTCATGCATCGAATCCGGATGACCAT
CATCAGGCGGCCAGATGGGATAAGGCCGGATAAACTGGTGCTTATTTTCT
TACGGTCTTAAAAGGGCCGTAATCAGCGACG
UFO04068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31715-RA | 580 | CG31715-RA | 67..429 | 9..371 | 1815 | 100 | Plus |
| CG31715-RB | 574 | CG31715-RB | 67..423 | 9..371 | 1715 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10341822..10341932 | 93..203 | 555 | 100 | Plus |
| 2L | 23513712 | 2L | 10341682..10341766 | 9..93 | 425 | 100 | Plus |
| 2L | 23513712 | 2L | 10342150..10342234 | 204..288 | 425 | 100 | Plus |
| 2L | 23513712 | 2L | 10342288..10342372 | 287..371 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:09 has no hits.
UFO04068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:30 Download gff for
UFO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31715-RA | 62..427 | 9..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:22 Download gff for
UFO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31715-RA | 67..432 | 9..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:24 Download gff for
UFO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31715-RA | 67..432 | 9..375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:24 Download gff for
UFO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10341822..10341932 | 93..203 | 100 | -> | Plus |
| 2L | 10342150..10342233 | 204..287 | 100 | -> | Plus |
| 2L | 10342289..10342372 | 288..371 | 100 | == | Plus |
| 2L | 10341682..10341765 | 9..92 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:22 Download gff for
UFO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10341822..10341932 | 93..203 | 100 | -> | Plus |
| arm_2L | 10342150..10342233 | 204..287 | 100 | -> | Plus |
| arm_2L | 10342289..10342372 | 288..371 | 100 | == | Plus |
| arm_2L | 10341682..10341765 | 9..92 | 100 | -> | Plus |
