UFO04069.5prime Sequence
1160 bp (1034 high quality bases) assembled on 2010-09-10
> UFO04069.5prime
CAGTCGACATGTCGACCGCTTCGCGAGTGACTTTGGGACTGGCGGTCTCC
ATTTCCACAGCGATCATAGGTTATGTGCACTATAAACAATCGGCAGACCG
CCTGAGACTGCACGATGGTGTCCTGAGGGACGTTGAGCAGCAACAACGGC
GCAAACACGAGAATACCTACACGCTGCAGCAGCAAATAGACATGACCAAG
CAACTGAAAGCCAGGGAGGCGTCTAGCAACTCCTCTGACACGCCCGTACC
TCCATCGACGCATCGCGCACAGAGTAATCTTCAAGCGGAGAAGCCAGCAG
TGCAAAATGAAGGCGAGGCTTTCAGAGGTGTTCCTCAGGGTGGAACGACT
AATCACGATGGAAGCCCGCCAACTGACATAGCTGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCAATAAACCCTTTAGGGAAAAAGGCCAGGTTTTCACCGTAA
CACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGG
TATCCCCTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGTG
TAACAAGGGTGAAACACTATTCCATATCACCAGCTCACCGTCTTTCATTG
CCATACGAATCGGATGACCATTCATCAGGCCGGCAGATGTGAATAACGCG
GAATAAAACTGGGCCTTATTTCTTACGTTTTAAAAAGGCGTATATCCAGC
CGGAACGGCT
UFO04069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-RA | 748 | CG11562-RA | 150..525 | 8..383 | 1880 | 100 | Plus |
| U2af38-RB | 1655 | CG3582-RB | 1615..1655 | 383..343 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 292716..292999 | 100..383 | 1420 | 100 | Plus |
| 2L | 23513712 | 2L | 292568..292660 | 8..100 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:06 has no hits.
UFO04069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:29 Download gff for
UFO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 99..478 | 1..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:20 Download gff for
UFO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 146..525 | 1..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:21 Download gff for
UFO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 146..525 | 1..383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:21 Download gff for
UFO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 292717..292999 | 101..383 | 100 | == | Plus |
| 2L | 292564..292660 | 1..100 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:20 Download gff for
UFO04069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 292717..292999 | 101..383 | 100 | == | Plus |
| arm_2L | 292564..292660 | 1..100 | 97 | -> | Plus |
