UFO04070.5prime Sequence
1110 bp (1007 high quality bases) assembled on 2009-02-13
> UFO04070.5prime
CAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTGCATTGGTG
GCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCTTGTCCAAC
TTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGGCCAGAACT
TCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACTGTCGCCGC
GAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCCTGGTGCAG
CTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTTCAAGCTGG
AGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGCCGGTGTGC
ATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGCCTGCTGGA
GAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGCTGAGCTCT
TCCGTCTTTTGCGCGAAGAGAAATGCGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAACTGGTGAACTCCCCCAGGGATTGGCTGAGACGAAAAACATATTCTC
ATAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAAATCT
TGCGAATATTTTGTGGTAGAACTGCCGAAATCGTCTTGTATTCACTCCAG
AGCGGATGAAACGTTTCAGTTGCTCATGAACGGTGTAACAGGGAACCTAT
CAATACACCA
UFO04070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kaz-m1-RB | 1705 | CG8342-RB | 96..563 | 9..476 | 2340 | 100 | Plus |
| Kaz-m1-RA | 670 | CG8342-RA | 96..563 | 9..476 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26015088..26015345 | 219..476 | 1290 | 100 | Plus |
| 3R | 32079331 | 3R | 26014816..26015026 | 9..219 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:57 has no hits.
UFO04070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:40 Download gff for
UFO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m1-RA | 85..559 | 1..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:24 Download gff for
UFO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kaz-m1-RA | 86..560 | 1..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:59 Download gff for
UFO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kaz-m1-RA | 89..563 | 1..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:59 Download gff for
UFO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26014809..26015026 | 1..219 | 98 | -> | Plus |
| 3R | 26015089..26015344 | 220..475 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:24 Download gff for
UFO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21840531..21840748 | 1..219 | 98 | -> | Plus |
| arm_3R | 21840811..21841066 | 220..475 | 100 | <- | Plus |
