UFO04071.5prime Sequence
1161 bp (1057 high quality bases) assembled on 2010-09-10
> UFO04071.5prime
CAGTCGACATGCGGCGCCTGGTGCGAAATTGGAATTGCCGATTGTTATTT
AACGCCAAATCCGGCCAAGAAATTGTCAGCCATGCCGGAATTCACCAGGA
GGCCAAGACCAATGCGATTCCCAGGGAAAAGAAAGTGATTGAGGCGGACA
AGAATGGATACGGGGCCAAACATTGCATGAGTCTAGTGGAGAAATACGAC
TACGAGAACTACCTGTGCACCTTGCTCCTACCACGGGAACTGCGACGTGC
TGCCTTCGCCCTACGGGCATTCAATGTGGAGGTCTCCAGATCGGTTAGCG
GCCATCAAATTGAGCCGCAAATAGCCAAAATGCGCCTTAAGTTCTGGCAC
GACTCCATAGACAAGTGCTTTGAGCCGGATTCCCAAAGATCGTACGTGGA
GGACCAGCCTGTCCTGCGCGAACTGAAGCACACGGTGGGCAGTCGCAAGC
TAAATAAGGTATATTTGCGCCGTCTGGTCACAGCACGGGAACGTCCGCCC
ACGCATGCATTTGAGTCGATACGCGAGCTGGAGGAGTACACGGAACAGAC
CTTCTCTTCGCTATTGCTCCTGCTGTTGGAGGTGGGCGGAGTGCGTGACC
TAAATGCTGATCATGCCGCCTCCCACTTGGGCAAGGCCCAAGGCATCGCC
ACCCTGCTGCGATCGATACCGCTGGCAGGACGTCAGCAGGCGCCCTGCAT
TCCGCTCGAGGTGCTGGTGCTGCATGGCGTCAGCCAGGAGCGCATCATTC
GCTCTAAGAGCGACGACAAGGGTGTCGAGGACTGTATATTCGATGTGGCC
AGTGCCGCCAATACGCACCTAAAGCTCGCCAGGCAGCTGCACGATAAAGG
TGCCGCCGCAGTGCGCAAGATCTTCCTCTCCGCCGTGGCCACGGATGCAT
ATTTGGAGCGCCTCCGCCGTGCCAACTTCCTGCTAACCCACAAGAGCTGC
GTAGGCCGCGACACCTTACTGCCAGCACGTTTATTCTGGAGTCGCTGCTT
ATCGGTTCGCAAGCTTTCTAGACCATCGTTTGGCGCGCGGGCCCCAGGTA
AGTGGTCATATCATAATCATAATTCATAATCATAATCACCAACTAGGCTA
AGAGAAATCTGGGTCATGACTATTGCCTGATTCCTACACAAATAAAACGC
GCCCCGGCGGG
UFO04071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sicily-RB | 1385 | CG15738-RB | 307..1308 | 9..1008 | 4915 | 99.6 | Plus |
| sicily-RA | 1110 | CG15738-RA | 32..1033 | 9..1008 | 4915 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11892730..11893356 | 306..932 | 3040 | 99.7 | Plus |
| X | 23542271 | X | 11892038..11892220 | 9..191 | 915 | 100 | Plus |
| X | 23542271 | X | 11892289..11892403 | 191..305 | 575 | 100 | Plus |
| X | 23542271 | X | 11893590..11893660 | 932..1001 | 305 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:21 has no hits.
UFO04071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:33 Download gff for
UFO04071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15738-RA | 24..1037 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:28 Download gff for
UFO04071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sicily-RA | 27..1040 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:30 Download gff for
UFO04071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sicily-RA | 27..1040 | 1..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:30 Download gff for
UFO04071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11892033..11892219 | 1..190 | 97 | -> | Plus |
| X | 11892289..11892403 | 191..305 | 100 | -> | Plus |
| X | 11892730..11893355 | 306..931 | 99 | -> | Plus |
| X | 11893590..11893648 | 932..990 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:28 Download gff for
UFO04071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11786066..11786252 | 1..190 | 97 | -> | Plus |
| arm_X | 11786322..11786436 | 191..305 | 100 | -> | Plus |
| arm_X | 11786763..11787388 | 306..931 | 99 | -> | Plus |
| arm_X | 11787623..11787681 | 932..990 | 100 | == | Plus |
