UFO04076.5prime Sequence
1143 bp (1018 high quality bases) assembled on 2009-02-13
> UFO04076.5prime
CAGTCGACATGAACTCCTACTTCGTGATCGCTTTGAGTGCTCTTTTTGTG
ACTCTGGCTGTTGGATCGTCCCTTAATCTGAGCGACGAGCAGAAGGATCT
GGCCAAGCAGCATCGTGAGCAGTGCGCCGAGGAAGTGAAACTTACCGAGG
AGGAAAAGGCCAAGGTCAATGCCAAGGACTTCAATAACCCCACCGAGAAC
ATCAAGTGCTTTGCCAACTGCTTCTTCGAGAAGGTCGGAACCCTGAAGGA
CGGTGAGCTGCAGGAGTCAGTGGTGCTGGAGAAGCTCGGCGCTCTCATTG
GCGAGGAGAAGACCAAGGCGGCTCTGGAGAAGTGCAGGACCATCAAGGGC
GAGAACAAGTGTGATACCGCCTCCAAGTTGTACGATTGCTTCGAGAGCTT
CAAGCCCGCCCCCGAGGCTAAGGCCGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCACAT
CTGCGATATATGTGTAGAAACTGCCGAAATCGTCGTGTATCACTCAGAGC
GATGAAAACGTTTCAGTTGCTCATGAAACGGTGTAACAGGGTGAAACTAT
CCCATATCACCAGCTCACGTCTTTCATTGCAATACGAATCGATGACATCA
TCAAGGCGGACAAATTATAGCCGATAAGCTGGCCTATTTCCTT
UFO04076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56a-RA | 547 | CG11797-RA | 46..464 | 7..425 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19698068..19698425 | 68..425 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 19697768..19697829 | 7..68 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:02 has no hits.
UFO04076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:31 Download gff for
UFO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 42..469 | 1..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:13 Download gff for
UFO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 42..469 | 1..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:20 Download gff for
UFO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56a-RA | 42..469 | 1..430 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:20 Download gff for
UFO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19697764..19697829 | 1..68 | 95 | -> | Plus |
| 2R | 19698069..19698425 | 69..425 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:13 Download gff for
UFO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15585269..15585334 | 1..68 | 95 | -> | Plus |
| arm_2R | 15585574..15585930 | 69..425 | 100 | == | Plus |
