UFO04079.5prime Sequence
1160 bp (1045 high quality bases) assembled on 2010-09-10
> UFO04079.5prime
CAGTCGACATGGCTAGCAAAAAGTACAGTGACGTGAATCTTTACGATCTT
CTGGGCATTTCTCTCGAGTCTGATCAAAATGAGATACGCAAGGCGTACCG
CAAGAAGGCCCTCGAGTGCCATCCCGACAAGAATCCGGACAATCCGAAGG
CAGTCGAGCGCTTCCATGAGTTGTCCAAGGCTCTGGAGATCCTCACGGAT
GAATCCGCGCGCGCAGCTTATGACAAAGTGCTGAAGGCCAAGAAGGCGGC
GGAGCTGAGGAGTCGCCAACTGGACGGGAAGCGGCAGAAGCTGAAGCTGG
AACTGGAGGAACGTGAACGGGCGGCACTGCACAAACTGGCGAAGAGCCAA
CCCTACAGCACGGTGGCCAAAAGCGACGAGGAGGTGCTGCATGAGCAGAT
CGAGCGGTTGCGACGCGAGGGCTCCCGTCTGCTGGAGGAGGAGCAGCGAG
CCATGCAGGAGCAGTTCCGGCGGAATCACGCGGAGCAACAGAAACTGCAG
CAACAGCCGGTCCAGTTTGATTCCGCCCAGCATCGCATCAAGATGAAGTG
GAAGGCCGAACCTGGCCAGGATTACACACAGCAGGAGCTGCTCAAGTATC
TGAAGAAGTACGGCGACGTGGTGGCCCTGGTGGTCAACAGCAAGCGACGC
GGACGCGCCATGGTGGAGCTGGCCACGCGCGAAGCCTGCGACATGGTCTT
GGCCTACGAAAAAGGCGATCCCGCCAAGCCGCTGCACTTCGAGTGGGTAA
CGCCGCCGGCGGCAGACAAGCAGACAACCAAATCGGCCACCACTGGGTGC
AGTGCGTCATCCACCGACTACGAGGACCTGGTCATGCGAAAGCTGCGCCA
AGCTGAGGAACGTAAGAGACTCATTGAGCAGATGATGAAGGACGAGGAGG
GCGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAGGTAAGTG
GTCATAATCATATCATAATCATAATCATATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGGTGCTTGGAATTCTCACCAATAAAAACGCCCGGCCG
CAACGAGCGTCTGAACAATTCCGAATGAGTTCTTGAGGTCATTTACTGGA
TCTATCACCAGTGATCCAGGGGAGTCTCGAATTCTATAGCCCCCGCCTGG
CACTCTCGAA
UFO04079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-RA | 1263 | CG17187-RA | 172..1068 | 9..905 | 4470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11230812..11231708 | 905..9 | 4470 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-26 14:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6651..6908 | 364..614 | 111 | 53.3 | Plus |
UFO04079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:27 Download gff for
UFO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 141..1049 | 1..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:17 Download gff for
UFO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 164..1072 | 1..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:18 Download gff for
UFO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 164..1072 | 1..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:18 Download gff for
UFO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11230807..11231715 | 1..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:17 Download gff for
UFO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7056529..7057437 | 1..909 | 99 | | Minus |
