UFO04080.5prime Sequence
1076 bp (970 high quality bases) assembled on 2010-09-10
> UFO04080.5prime
CAGTCGACATGCCACGCTACCGTGAATGGGATTTAGCCTGCAAAGTTTAC
GTGGGCAATCTGGGATCCTCGGCCTCCAAATACGAGATCGAGAACGCCTT
TAGCAAATACGGACCCTTGCGCAACGTCTGGGTGGCCCGCAATCCGCCCG
GTTTCGCCTTCGTCGAGTTCGAGGATCGTCGCGACGCTGAGGATGCGACC
CGTGGCCTCGACGGCACCCGCTGCTGTGGCACCCGCATCCGTGTCGAAAT
GTCATCAGGCCGTTCACGAGAGGGTCGCGGCGGTGGCGGTGGAGGCGGCG
GTGGTGGAGGCGGATCCGGTGGCGGCGGCCGCGGCGGTGGCAGTGGCGCC
CGTGCTGGAGGCGGTGGAAGGGCTGGCGATGGCGGTGGACGCTATAGATC
ACGCTCACCCCGCCGCTCAAGGACACGCAGCCGCAGCTTTTCGAGGGATC
GTCGCAGTCGCTCCGACTCCAGTGACCGCCATGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTTGGCCCA
CGTTAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAAACGAAAAC
ATATTCTCCATAACCCTTTAGGAATAGCCAGTTTCACGTACACGCCACAT
CTGCGATAATGTGTAGAACTGCCGAAATCGTCTGTATTCAGTCAGATGAT
GAACGTTCAGTTGCTCATGAACGGTT
UFO04080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp1-like-RC | 1456 | CG1987-RC | 190..663 | 9..482 | 2355 | 99.8 | Plus |
| Rbp1-like-RA | 917 | CG1987-RA | 190..663 | 9..482 | 2355 | 99.8 | Plus |
| Rbp1-like-RB | 2452 | CG1987-RB | 190..578 | 9..397 | 1945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13384300..13384688 | 397..9 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 10784625..10784830 | 27..232 | 460 | 81.6 | Plus |
| X | 23542271 | X | 13380959..13381045 | 482..396 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:55 has no hits.
UFO04080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:27 Download gff for
UFO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-like-RA | 182..659 | 1..482 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:16 Download gff for
UFO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-like-RA | 186..663 | 1..482 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:16 Download gff for
UFO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-like-RA | 186..663 | 1..482 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:16 Download gff for
UFO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13380959..13381043 | 398..482 | 98 | <- | Minus |
| X | 13384300..13384692 | 1..397 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:16 Download gff for
UFO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13274992..13275076 | 398..482 | 98 | <- | Minus |
| arm_X | 13278333..13278725 | 1..397 | 98 | | Minus |
