UFO04081.5prime Sequence
1140 bp (943 high quality bases) assembled on 2010-09-10
> UFO04081.5prime
CAGTCCCCTGTTTTCCAAATTCTCCCTGCTCGCCGTGGTTCTCGCTTTTG
GCCTGGTTTCTGGCCTCCCCCTTAGCCTCGTGGTAAAGCCTTCCAAGCTG
AAGCTGCCCACCAACAAGAAGATCCTTGGCCTTCAGCAGCAAACGGAAGA
GCTGGCTGCTCGGGATCCTGGCACTTCGGTACGCTGCTTCGACTACTACA
TACCCATCATCAACGGGCTGTCGGCCCAGTACGAACTGGACTACAATAAG
TGCGTTAAGGACTACGACACCGCCAGCGAACTGGTCCTCGCCGCCTGGAA
CAGCACTCTCTTCGGCATCCAGGCTTCCGGGGATCGTGGCTGCAACACCT
TCTTCGACTGCTCCTCCATTGTGGACTTCGTGCTCGCCTTCGAGTGCTTC
GCCAACGTCGGAGCTGAGCAATCAAAAATCATGTACCAAGTCTCGGCGAA
TGCCACCGAAGCCGCCGTCCAGATCAAGATCCATTTGCAGACTTTGGACA
GCCAGTTGGAAAGCTGCTTGAACTATTCCGAAAAGGATTTCGTGGAGGGC
ACCTCGCTCTACTATGGAGAACTCAACAAATGCCTTGCTGGAGCTCCAGT
TCCGCAGGATACCATTGCAAATTGGTATTATACCACCGCCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAACG
GCATGATGAACCTGATCGCCAGCGCATCAGCACCTTGTCGCCTTGCGTAT
AAATATTTTGCCCATGGTGAAACCGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAATCAACCTGGGTGAAACTTCACCCAAGGAATGCTGAAACGA
AAAAAACATAATCTCTATATACCGTTAGAGATGCAAGTTT
UFO04081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7567-RA | 770 | CG7567-RA | 40..671 | 9..640 | 3115 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29587664..29588065 | 410..9 | 1980 | 99.5 | Minus |
| 3R | 32079331 | 3R | 29587336..29587566 | 640..410 | 1140 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:51 has no hits.
UFO04081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:26 Download gff for
UFO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7567-RA | 30..670 | 1..644 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:14 Download gff for
UFO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7567-RA | 34..674 | 1..644 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:14 Download gff for
UFO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7567-RA | 34..674 | 1..644 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:14 Download gff for
UFO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29587332..29587566 | 410..644 | 98 | <- | Minus |
| 3R | 29587665..29588070 | 1..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:14 Download gff for
UFO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25413054..25413288 | 410..644 | 98 | <- | Minus |
| arm_3R | 25413387..25413792 | 1..409 | 98 | | Minus |
