UFO04084.5prime Sequence
1101 bp (980 high quality bases) assembled on 2009-02-13
> UFO04084.5prime
CAGTCGACATGTCTACGACACCAAAATCGAGCGAAGATTTGCTGGGCGAA
TCTTGGATCGAACTCAGCACAACAGCTGCGATGGCTGGCATCAAGAGCCC
CGACAGAATCACTCCGTTGCCATTCAACAATGGCGAGGAGTACCTGAGAC
TTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGTCGAGCCGTGTCGTCTCC
TTGGCCAGCTCCCGTCGTGATACGCCCCGTGATAGCCCCAAGAGTCCACC
GAACAGTCCCCAGTCGGAGCTCTGTCCGGATGATGAGCTCAGAAACGTGT
ACATCAACTACTGGACCAAGGGAGGAGACAAACAGAATGCAGGCAATGAA
GATTGGCTGAAGAACTGGAATCAGCCACCCAGTAGCTGGAACATTGAGGA
TTCAAGTCGGGATGCCGGCGACGAGGGCGAGAAAAAGAAGACTAACACAG
GCTACTCCATCCGTTTGAAGCGACTGGGCTCCAACTCGTTGTTCTCCCGC
GAAATTCTGTACTCGCTGCTGGTGACCAACGTCCTGTCCCTGCTGCTGGG
AGCTGGATTCGGGCTATGGTTGAGCAAGCGTGGCATACTCCTTACCCGTG
TGGTCATTGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAAATCAAATTACGC
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAAAGCATCTGC
CGACATGGAAGCCATCACCAACGGCATGATGAACCTGAATCGCAGGCGGC
ATCAGCACCTTGTCGCTTGCGTATAATATTGCCCATGGTGAAAACGGGGG
CGAAGAGTGTCATATTGCCACGTTTAATCAAAACTGATGAAACTCACCAG
GATGCTGAAACGAAAAACATATCCTCAATAACTCTTTAAGGGAATAGGCC
A
UFO04084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RA | 1725 | CG5059-RA | 387..989 | 9..611 | 3015 | 100 | Plus |
| CG5059-RE | 1543 | CG5059-RE | 244..806 | 49..611 | 2815 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 178..740 | 49..611 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516133 | 328..48 | 1375 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 563..380 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 382..319 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 611..562 | 250 | 100 | Minus |
| 3L | 28110227 | 3L | 20518968..20519007 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:04:50 has no hits.
UFO04084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:33 Download gff for
UFO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 426..1034 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:37 Download gff for
UFO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..995 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:55 Download gff for
UFO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..995 | 9..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:55 Download gff for
UFO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515861..20516132 | 49..320 | 100 | <- | Minus |
| 3L | 20518968..20519007 | 9..48 | 100 | | Minus |
| 3L | 20515329..20515383 | 563..616 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 383..562 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 321..382 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:37 Download gff for
UFO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 563..616 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 383..562 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 321..382 | 100 | <- | Minus |
| arm_3L | 20508961..20509232 | 49..320 | 100 | <- | Minus |
| arm_3L | 20512068..20512107 | 9..48 | 100 | | Minus |
