UFO04086.5prime Sequence
1131 bp (1018 high quality bases) assembled on 2009-02-13
> UFO04086.5prime
CAGTCGACATGCAGCGACAGATTATTAACATTCTGGGACAGACGACGCGT
CGCCTGGCTAGCGGCCAGCAAATTCGCATGCTGTCAGTTTCTGCGCCGCG
ACAGGAGATCTTCAAAGTCCAGAGCGCCGAGGACTTTGACAAGAAAGTAA
AGAACAGCCAGCAGCCCGTGATTGTGGACTTCTTCGCAACCTGGTGCAAT
CCCTGCAAGCTGCTAACCCCGCGCATCGAGAGTATTGTGGGCGAACAGGC
CGGTTCCATCAAGCTGGCCAAGGTGGACATAGATGAGCACAGCGAACTGG
CTCTGGACTACGATGTGGCCGCCGTGCCCGTGCTAGTGGTGCTGCAGAAC
GGCAAGGAGGTGCAGCGCATGGTGGGACTCCAGGACGAGGACAAAATCCG
GGCCTGGGTTGCCGCCGCCGTCAAACAGGCCAAGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATCTCAATAAACCCTTTAGGAAATAGGCCAGGTTTCACCGTAACA
CGCCACATCTTGCGAATATATGTGTAAGAACTGCCGGAAATCGTCGTGTA
TCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATGAAAAACGGTGTAA
CAAGGTGAACACTATTCCCATATCACCAGCTCACGTCTTCATGCCATACG
AATCGAATAGAAAACTTTCTCAGGCGGCAGA
UFO04086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8993-RA | 616 | CG8993-RA | 83..509 | 8..434 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2372526..2372769 | 191..434 | 1220 | 100 | Plus |
| 3L | 28110227 | 3L | 2372281..2372463 | 8..190 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:44 has no hits.
UFO04086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:24 Download gff for
UFO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8993-RA | 79..512 | 1..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:31 Download gff for
UFO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8993-RA | 79..512 | 1..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:11 Download gff for
UFO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8993-RA | 79..512 | 1..438 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:11 Download gff for
UFO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2372277..2372463 | 1..190 | 97 | -> | Plus |
| 3L | 2372526..2372768 | 191..438 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:31 Download gff for
UFO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2372277..2372463 | 1..190 | 97 | -> | Plus |
| arm_3L | 2372526..2372768 | 191..438 | 97 | -> | Plus |
