UFO04087.5prime Sequence
1133 bp (1021 high quality bases) assembled on 2009-02-13
> UFO04087.5prime
CAGTCGACATGAACACACAAATCGTTGTATTTGCGGTAGCTCTGATGATG
CACTGCATCTCTGCCGTCGAATTCACCTTCGATCTGGCCGATAACGCGGT
GGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTACTTTGAGT
TCCAGGTGTCGGCCGGTGGCCAATTGGACGTGGACGTCACCCTGAAGGAT
CCGCAGGGCAAGGTCATCTACAGTCTGGAGAAGGCCACCTTCGATAGTCA
TCAGTTCGTTGCCGAGACAACGGGCGTGTATACCGCTTGCTTTGGCAATC
AATTCTCGGCCTTCTCGCACAAGATCGTCTACGTGGACTTCCAAGTGGGC
GAGGAGCCGGCTCTGCCCGGTGTGGATGAACATGCCACGGTGCTCACACA
GATGGAGACATCGTCGCAGGCGATTCACAAGGGCCTCAACGACATCCTGG
ACGCCCAGACGCATCATCGACTGAGGGAGGCGCAAGGTCGCAAGCGGGCC
GAAGATCTCAATCAGCGGGTTATGGTCTGGTCATCCCTGGAGACGGCCGC
AGTCATCGTGATCGGTCTCGTCCAGATTATGGTGCTGAGGAACTTCTTTA
CGGACCGAAAGCCCAGCCAGGCACACTACGGGCGGCTGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATCATTAGCATTCTGCCGACATGAAGCCATCACAACGGCA
TGATGACCTGATCGCAGCGGCATCAGCACCTGTCGCTGCGTATATATTTG
CCCATGTGAAACGGGGCGAGAAGTGGTCATTTGCACGTTAATCAACTGTG
ACTCACCCAGGATGCTGAACGAAACATTCTCATAACCCTTAGGAATGCAG
TCACGTAACCGCCCATCTGCAATAATGGTGAGA
UFO04087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p24-1-RB | 1101 | CG1967-RB | 187..817 | 8..638 | 3155 | 100 | Plus |
| p24-1-RA | 1541 | CG1967-RA | 187..817 | 8..638 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11851633..11852263 | 638..8 | 3155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:26 has no hits.
UFO04087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:23 Download gff for
UFO04087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p24-1-RA | 172..802 | 8..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:19 Download gff for
UFO04087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p24-1-RA | 187..817 | 8..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:28 Download gff for
UFO04087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p24-1-RA | 187..817 | 8..638 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:28 Download gff for
UFO04087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11851633..11852263 | 8..638 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:19 Download gff for
UFO04087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11745666..11746296 | 8..638 | 100 | | Minus |
