UFO04088.5prime Sequence
1106 bp (968 high quality bases) assembled on 2009-02-13
> UFO04088.5prime
CAGTCGACATGTTGGCTCCCCTGGGCTTCAGCTGTCCGCGATGCTTGCTC
CTGCGACGTGGCGCCGAGCGTTGGGCCTCACTGGCCCGCCAATTGTCGGG
CAGCAGCTCCCAGGATGATGCCAGCAGCAAGGATGCGGCCGCCCAGGAGG
CAGCAAGTGGCTGTCCGCCCAATAGCACAACGACGGGCACTGACACTCCC
AAAGCCAAAGATAAAACCACCAAGGGAAGGAAGCGGCTCAGAAACATAGA
GATACCTCCCGAGCCCACCACCTGCTGCATGTCGGGCTGCGCCAACTGCG
TTTGGCTGGACTACGCACAGACGCTGGCCAAGCTGCTGGGCGACAACGAT
GAGGAGGCGCGAGAGATTGTGCTGAGCAAGATCACCGACCCGAACCTGAA
GATGTTCCTCAGCCTGGAGCTGCGCCAGATGGCTAAGCAGCGGGAGGAGA
AGGCGGCGGCGGAGAAAGCAGCGAAGCAGGGAAAGCCAAAGAAATCCTCG
CCCCCGCCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGC
GAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAACTCACCA
GGATTGCTGAGACGAAAACATATTTCCTCATAACCTTTAGGAAATAGGCC
AAGCTTTCACCGTACACCGCCACATCTTGCGATATATGTGTAGAAACTGC
GGAATCGTCTGTATCACTCGAGCGGATGAAACGTTCAGTTTGCCTATGAA
CGGGTT
UFO04088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5500-RA | 859 | CG5500-RA | 242..742 | 9..509 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26880083..26880342 | 250..509 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 26879594..26879836 | 9..251 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:04:43 has no hits.
UFO04088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:23 Download gff for
UFO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5500-RA | 230..739 | 1..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:32 Download gff for
UFO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5500-RA | 233..742 | 1..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:49 Download gff for
UFO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5500-RA | 233..742 | 1..509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:49 Download gff for
UFO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26879585..26879836 | 1..251 | 98 | -> | Plus |
| 3R | 26880085..26880342 | 252..509 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:32 Download gff for
UFO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22705307..22705558 | 1..251 | 98 | -> | Plus |
| arm_3R | 22705807..22706064 | 252..509 | 100 | == | Plus |
