UFO04090.5prime Sequence
1159 bp (1027 high quality bases) assembled on 2010-09-10
> UFO04090.5prime
CAGTCGACATGGAGCCCATATCACATCTGGTGAAGTCCTCGCTGCCCAAT
TACTTGTCAAGTCTGCCGGTTCCCGACAGCATCGGCGGCTGGTTTAAGCT
CTCCTTCAAGGATTGGTTGGCCCTGATCCCACCCACCGTGGTGGTGGCCG
GACTCGGCTACACCGCCTACCTGGCCTACTGTCCGGCGGCACGGGCCAGC
TGCGCGGCCAAAAACAGCGGACGCTGCAACAACCACATCCGCAAGAACGA
GCCCAAGGTGGTGGACATGATCGACGTGGAGGATATTGCGGAGAAGGCGG
CCTTCTGTCGCTGCTGGAAGACCAAGAACTGGCCCTACTGCGATGGCAGT
CATGGCGAGCACAACAAGCAGACTGGAGACAACGTCGGACCAATTGTCAT
CAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGG
AAATAGGCCAGGTTTTCACCGTAACACGCCACATTCTTGCGAATATATGT
GTAGAAACTGCCGGAAATCGTCGTGTATTTCCACTCAGAGCGATGAAACG
TTTCAGTTTGCTCATGAAAACGGTGTACAGATGACACTATCCCATATTCA
CCAGCTCACGGTCTTCATGCCATACGAAATTCCGGATGACATTCATCAGC
CGGGCCAAGAATGTCAATACGCGATACTTGCCTTATTTCTTTACGCCTTA
AAACGGCCG
UFO04090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cisd2-RA | 675 | CG1458-RA | 85..488 | 4..407 | 2005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29222546..29222769 | 329..106 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 29223243..29223344 | 105..4 | 495 | 99 | Minus |
| 3R | 32079331 | 3R | 29222404..29222481 | 407..330 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:42 has no hits.
UFO04090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:17 Download gff for
UFO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1458-RA | 80..493 | 1..415 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:08 Download gff for
UFO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1458-RA | 81..494 | 1..415 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:09 Download gff for
UFO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cisd2-RA | 81..494 | 1..415 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:09 Download gff for
UFO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29222404..29222481 | 330..407 | 100 | <- | Minus |
| 3R | 29222546..29222769 | 106..329 | 100 | <- | Minus |
| 3R | 29223243..29223344 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:08 Download gff for
UFO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25048126..25048203 | 330..407 | 100 | <- | Minus |
| arm_3R | 25048268..25048491 | 106..329 | 100 | <- | Minus |
| arm_3R | 25048965..25049066 | 1..105 | 96 | | Minus |
