UFO04092.5prime Sequence
1110 bp (1007 high quality bases) assembled on 2010-09-10
> UFO04092.5prime
CAGTCGACATGGCGAACACTTATTTCGATGAGTATGAAAACTTGGAGATC
CACGAGCTCATGCTGAAGGATCGTCCTCGGCAAGAAGCCTACTACAATGC
GATATTGGGGAATAAGGATCTGTTCAAGGACAAGATCGTAATGGATGTTG
GTGCCGGCACAGGGATTCTGTCCGCCTTTTGTGCGAAAGCAGGAGCCCGT
TTGGTCTACGCCGTAGAAGCATCCAATGTGGCCACCAAAGTTGCGCTGGA
TTTGATTGAGGATAACGGCCTGACGAACGTGGTGAAGGTGATCCAGTCGC
GTGTTGAGGAATTCGTACTGCCTGCCGAGGCGGAAAAGGTGGACATCATT
GTGTCCGAGTGGATGGGCTTCTACCTGCTGCACGAGGGCATGTTGGACTC
GGTTCTCCTGGCCCGGGACAAGTTCCTCAAGGAGGGTGGACTCCTGTTCC
CCAGCGAGTGCACAATTTTCGTGGCACCCTGCTCGGTACCATCGCTCTTC
GATGATTGGCACAACGTGGACGGCATCAAAATGGACACGTTTGCCAGAAA
ACTCAGAACCCAAAAGTCATCCCGACCGGAGATTACACAGCTGAATCCGC
AAGATCTTCTGCACGAGGGCGTCGTCTTTCACTGGATGAATCTGCTGGAT
GTGGAAGCCAGCGATTTGGACAGCATTCAGTTCAAGGAGGTAATAACAGC
CCAGAAGGCGGGCAATCACCAGGGCTTCTGCATTTGGTTCGATGTACAGT
TTCCTGGCGAAGATTTTGTTCTAAGCACATCGCCGCTATCCCCGCCAACG
CATTGGAAGCAGTGTGTAGTCGTCCTGCCCGAGAATCCTGCGAAATCTGG
AGGAGAAAGTCACCCATTTGCATTTCAAATCACATGAAGCGCAGTGCTGC
CGAATATGCGTAAATACAATCTGGAGGGTGGATTTGCTAGACCCCAAACA
CAGAGGGAGCATTCCATGGCCTTGCTCCTTGTCACATGACGAAAGTGCAT
TCTGACGAGCTCATTTTAAAATGATGGACACCCTCGCCAGCTTTTCTAGA
CCATTCGTTTGGGCCGGCGGGCCAGAGTAAGTTGTCTATATCATAATCTC
ATATCATAAT
UFO04092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art8-RA | 1210 | CG16840-RA | 94..1114 | 8..1032 | 4750 | 98.3 | Plus |
| Nup154-RD | 5420 | CG4579-RD | 4416..5398 | 1032..46 | 4560 | 98.2 | Minus |
| Nup154-RC | 4612 | CG4579-RC | 4349..4612 | 1032..765 | 965 | 93.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11009917..11010899 | 1032..46 | 4235 | 98.2 | Minus |
| 2L | 23513712 | 2L | 11010954..11010993 | 47..8 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:39 has no hits.
UFO04092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:16 Download gff for
UFO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 93..1120 | 8..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:06 Download gff for
UFO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 94..1121 | 8..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:07 Download gff for
UFO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 94..1121 | 8..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:07 Download gff for
UFO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11009910..11010897 | 48..1040 | 97 | <- | Minus |
| 2L | 11010954..11010993 | 8..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:06 Download gff for
UFO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11009910..11010897 | 48..1040 | 97 | <- | Minus |
| arm_2L | 11010954..11010993 | 8..47 | 100 | | Minus |
