UFO04094.5prime Sequence
1123 bp (981 high quality bases) assembled on 2010-09-10
> UFO04094.5prime
CAGTCGACATGACCAAACCGACGCGCGAACACTGTTCCCTGGCCCTGCTG
GCGCTTCTCGTCGCCCCGTTCGTGGTGCTCGGTGAGGATATGCCCAGGGA
GCCGGACTACATGAAGCGGGAGCACAGTTTGGTGCGTCCATTCCAAGGCG
TAGGCGTGATCCTGCCACACTGGGACTTCCTGGGTAACACGATGGTGACC
AGCAACTATATAAGACTGACGCCGGACTTACAGTCCAAGAGCGGTGCACT
TTGGAACTACTCGCCCGTGATGACTCGCAATTGGGAAGTGCACGTTGGCT
TTAAGGTGCACGGCAAGGGAACTGAACTGTTCGGCGACGGATTTGCCATT
TGGTACACAAAGGAGCGCATGCAAACCGGGCCGGTCTTTGGCAGCAAGGA
TCACTTCTCCGGACTGGCCATCATTCTGGACACCTATAGCAATCACAATG
GTCCACACAACCACCAACATCCATATCTCAGCGCCATGGTGAACAATGGC
AGCTGGAGCTACGACCACGATCGCGATGGAACGCACACTCAGCTGGCCGG
CTGCGAAGTTCGTTTCCGCAATGTGGAGTACGAGACGCTGGTTAGCATTC
GATACGAAAACGACATTCTGTCGGTTTCCACAGATCTGGAGAACCGCAAC
GAATGGAAGAACTGCTTTGTAGTGGCCAACGTTGAGCTACCCACGGGCTA
CCACTTCGGCATGTCTGCGACGACGGGTGATCTGTCCGACAATCACGATA
TTCACAGTTTCAAGTTTCTATGACCTGTACTTGAACGTAAATCACGATGA
GATTATCCGGCGCTCCAATATCATACCGAAATGCCAAGACATTCGAGCCC
CCGCGCGAGCACAAAGAGATCCCAAGCCCGGGAATGTCCAACGCCCAGAT
CTTCTTCATCCTTCTCTTCGTGATTGTCGTGCGGCTGCAGTGCCCATCTT
CGGCCATCCTCTACTTCAAGGATCGCAACGCGCGAACGTTTCTACGCAGC
CTTTCTAGAACCATTCGGTTGGCGCGGGCCCAGGTAGGTGGTCATAATCT
AATTCATAATCTTATCCATATCACACTAGCCTAGGAATCTGTCATGACTA
TGCTTGGAATCCACATAAAACGC
UFO04094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5510-RA | 1362 | CG5510-RA | 109..1096 | 8..995 | 4680 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24168474..24168803 | 792..462 | 1590 | 99.4 | Minus |
| 3R | 32079331 | 3R | 24168857..24169055 | 461..263 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 24169314..24169454 | 148..8 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 24167952..24168144 | 986..793 | 655 | 94.9 | Minus |
| 3R | 32079331 | 3R | 24169131..24169248 | 263..146 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:48 has no hits.
UFO04094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:25 Download gff for
UFO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5510-RA | 104..1100 | 1..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:13 Download gff for
UFO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5510-RA | 105..1101 | 1..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:12 Download gff for
UFO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5510-RA | 105..1101 | 1..1000 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:12 Download gff for
UFO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24169315..24169458 | 1..147 | 97 | | Minus |
| 3R | 24167926..24168144 | 793..1009 | 91 | <- | Minus |
| 3R | 24168474..24168803 | 462..792 | 99 | <- | Minus |
| 3R | 24168857..24169054 | 264..461 | 100 | <- | Minus |
| 3R | 24169131..24169246 | 148..263 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:13 Download gff for
UFO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19993648..19993866 | 793..1009 | 91 | <- | Minus |
| arm_3R | 19994196..19994525 | 462..792 | 99 | <- | Minus |
| arm_3R | 19994579..19994776 | 264..461 | 100 | <- | Minus |
| arm_3R | 19994853..19994968 | 148..263 | 100 | <- | Minus |
| arm_3R | 19995037..19995180 | 1..147 | 97 | | Minus |
