UFO04096.5prime Sequence
1069 bp (901 high quality bases) assembled on 2010-09-10
> UFO04096.5prime
AACAGTAAGTGCTCTTCCCATTGAGGAACGTGTCAATGGTGAAAATGGTT
GGTATGTGCCTCAGATAGACGGCAGTTTCGAGTGGATGGACAAACAGGAT
GCCGAGGAGCTCTTAAATAGAAATTCACTCATCGAAACACGTTCCAATGA
CGTGTCCTTTTACCTGTACACCAAACATAACCCAACCGTGGGAAAGGAAA
TCAGGGCTGATGCTTCATCAATCGAAGACTCTCATTTCGATAAGAACCAG
GGTACTCGTTTCGTAATCCACGGGTGGAATGGTCGCTACACTGATGGCAT
GAACGTCAAGATCACCCGAGCCTGGCTTTCGAAGGGAGACTACAACGTGA
TCGTTGTTAACTGGGATCGTGCCCAGTCCGTGGACTATATCTCATCGGTG
CGAGCTGTTCCTGGAGCTGGAGCCAAAGTGGGAGAAATGATTGAATATCT
GCATGAACACCATCATTTGTCCATGGAGAGCCTGGAAGTAATCGGACACA
GTTTGGGTGCCCATGTGGCTGGCTATGCTGGAAAGCAGGTGGGCGGCAAA
AGGGGTTCACACGATTGTCGGTCTGGATCCTGCCATGCCTCTTTTTGCCT
ACGATAAGCCTGACAAGCGACTGTCCACCGAAGATGCCTTCTATGTCGAG
TCTATTCAGACCAATGGGGGTGAAAAGGGTTTCCTAAAACCCATTGGCAA
AGGCACTTTTCTATCCGAATGGAGGAAGAAATCAACCAGGTTGCGGTTCA
GACATCGGAGGAACCTGCGCCCACGGACGATCCGTACGTATTACGTGGAG
GCAGTCACTGAAGGATACCTTTGGAACGATCAAGTGTCACGACTACCAGG
CTGCGTTGGCCACGAGTGCGGAAGCACCTACGGTGAGTTCGCATGGGAGC
TGTTACCACGCCTACATGTCCGACGGTGACTTCTATGTGCCCGTTAACGG
ACACGGCCCCTTTCGGAAAGATCGAAGCAAAGCTTTCTAAAACAATCGTT
TGGGCCGGCGGGTCCAGTTAGTGGTCCTAATCATAATCATAATTCGTATC
ATATTCCCAACTAGCCTAA
UFO04096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1090 | CG17191-RA | 60..1035 | 1..976 | 4610 | 98.6 | Plus |
| CG17192-RA | 1052 | CG17192-RA | 50..892 | 10..854 | 1290 | 77.5 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 386..1038 | 320..972 | 730 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27018663..27019635 | 976..4 | 4395 | 98.6 | Minus |
| 3R | 32079331 | 3R | 27017454..27018182 | 740..10 | 1170 | 78 | Minus |
| 3R | 32079331 | 3R | 27020306..27020935 | 948..320 | 550 | 75 | Minus |
| 3R | 32079331 | 3R | 27025023..27025472 | 948..497 | 220 | 73.5 | Minus |
| 3R | 32079331 | 3R | 27021153..27021257 | 108..4 | 210 | 80 | Minus |
| 3R | 32079331 | 3R | 27025581..27025637 | 388..332 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:45 has no hits.
UFO04096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:18 Download gff for
UFO04096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 60..1040 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:10 Download gff for
UFO04096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 60..1040 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:11 Download gff for
UFO04096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 60..1040 | 1..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:11 Download gff for
UFO04096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27018663..27019635 | 1..976 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:10 Download gff for
UFO04096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22844385..22845357 | 1..976 | 98 | | Minus |
