UFO04101.5prime Sequence
1130 bp (1031 high quality bases) assembled on 2009-02-13
> UFO04101.5prime
CAGTCGACATGTCGAAACCAATTACCTTTGTCACCGGCAACGCCAAGAAG
CTGGAAGAGTTGGTTGCCATCCTGGGACCCAGTTTCCCGCGCACCATTGT
GTCAAAGAAGATTGATCTTCCGGAATTGCAAGGCGACATCGACGAGATTG
CCATCAAGAAGTGCAAGGAGGCAGCGCGTCAGGTGAATGGACCCGTGCTG
GTGGAGGACACTAGTCTGTGCTTCAATGCGCTGGAGGGCTTGCCGGGTCC
GTACATCAAATGGTTCCTGGAGAAGCTGCAGCCGGAGGGGTTACACCGTC
TGCTCCATGGTTGGGAGAACAAAAGCGCTCAGGCTATTTGCACCTTTGGC
TACTGCGACGGTGTGGATGCCGAGCCTCTAATCTTTAAGGGCATCACCGA
GGGCGTTATCGTCGAACCTCGCGGCCCCCGGGACTTTGGATGGGATCCGG
TTTTCCAGCCCAGTGGCTACGATAAGACCTACGCCGAACTGCCCAAGTCC
GAGAAGAACACCATTTCCCATCGCTACCGCGCTTTAGCTCTACTGCGGCA
GCACTTCGAGAAACAGGACAAGTTAATAAACGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTT
GCCATGTGAAACGGGGGCGAAGAGTTGTCCATATGCACGTTTAATCAACT
GTGAACTCCACCCAAGGATGCTGAACGAAAAACTATCTCCATAACCCTTT
AGGAATAGCAGTTCCACCGTAACCGCCCAATCTTGCAATATGTGTTAGAA
CTGTGCCGAACGCTCTGGATACCTCGAGCG
UFO04101.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8891-RA | 769 | CG8891-RA | 111..684 | 8..581 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4978775..4979087 | 443..131 | 1565 | 100 | Minus |
| 2L | 23513712 | 2L | 4978569..4978708 | 581..442 | 700 | 100 | Minus |
| 2L | 23513712 | 2L | 4979144..4979269 | 133..8 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:24 has no hits.
UFO04101.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:18 Download gff for
UFO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8891-RA | 100..682 | 1..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:22 Download gff for
UFO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8891-RA | 102..684 | 1..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:59 Download gff for
UFO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8891-RA | 102..684 | 1..581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:59 Download gff for
UFO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4978569..4978707 | 443..581 | 100 | <- | Minus |
| 2L | 4978776..4979085 | 133..442 | 100 | <- | Minus |
| 2L | 4979145..4979272 | 1..132 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:22 Download gff for
UFO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4978569..4978707 | 443..581 | 100 | <- | Minus |
| arm_2L | 4978776..4979085 | 133..442 | 100 | <- | Minus |
| arm_2L | 4979145..4979272 | 1..132 | 96 | | Minus |
