Clone UFO04102 Report

Search the DGRC for UFO04102

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:41
Well:2
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG18294-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04102.5prime Sequence

1175 bp (1046 high quality bases) assembled on 2010-09-10

> UFO04102.5prime
CAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCGTTGCCTGC
GCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTACACTGCTCC
TCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGCCGTGGTAG
CTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTATCGCCAGG
AACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTTGCCGCTCC
TGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCCGCTCCTGTGGTGGCCA
AGTACGCTGCTGCTCCATTGGCTGCTCCTGTTGTGGCCAAGTACGCTGCT
GCTCCATTGGCCCACATTTCCTCCTTGGCTTACACCTCGCCTTTGGCATA
CAGTGCCTTGCCATCAGCTCCTGTTCTTCTTGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT
TTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAC
ATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA
CGCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTAT
TCACTCCAGAGCGATGAAACGTTTCAGTTGCTCATGAAAACGGTGTAACA
GGTTGAACACTATCCCATATCACCAGCTCACCGTCTTTTCATTGCATACG
AATCGGATGACATTCTACAGCGGGCCAGATGAATTAGCCGAAAACTTGGC
TTATTTTCTTTACGTCCTATTAAAA

UFO04102.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 507 CG18294-RA 55..477 9..431 2115 100 Plus
CG12519-RB 600 CG12519-RB 53..360 9..316 1480 98.7 Plus
CG12519-RA 507 CG12519-RA 53..360 9..316 1480 98.7 Plus
CG18294-RA 507 CG18294-RA 279..368 272..361 375 94.4 Plus
CG18294-RA 507 CG18294-RA 318..407 233..322 375 94.4 Plus
CG12519-RB 600 CG12519-RB 277..360 272..355 315 91.7 Plus
CG18294-RA 507 CG18294-RA 279..330 311..362 185 90.4 Plus
CG18294-RA 507 CG18294-RA 357..408 233..284 185 90.4 Plus
CG12519-RB 600 CG12519-RB 277..327 311..361 180 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19475047..19475457 431..21 2055 100 Minus
3L 28110227 3L 19472610..19472905 21..316 1420 98.6 Plus
3L 28110227 3L 19466699..19466962 284..21 1260 98.5 Minus
3L 28110227 3L 19471808..19472096 325..31 745 84.4 Minus
3L 28110227 3L 19475971..19476259 31..325 745 84.4 Plus
3L 28110227 3L 19478373..19478568 41..236 740 91.8 Plus
3L 28110227 3L 19423849..19424044 41..236 725 91.3 Plus
3L 28110227 3L 19467481..19467687 31..255 700 88.4 Plus
3L 28110227 3L 19488045..19488279 41..284 615 84.4 Plus
3L 28110227 3L 19475117..19475206 322..233 375 94.4 Minus
3L 28110227 3L 19475156..19475245 361..272 375 94.4 Minus
3L 28110227 3L 19423125..19423224 238..139 320 88 Minus
3L 28110227 3L 19472822..19472905 272..355 315 91.7 Plus
3L 28110227 3L 19424757..19424836 151..230 310 92.5 Plus
3L 28110227 3L 19471817..19471903 355..269 255 86.2 Minus
3L 28110227 3L 19476164..19476250 269..355 255 86.2 Plus
3L 28110227 3L 19464433..19464518 235..150 220 83.7 Minus
3L 28110227 3L 19475116..19475167 284..233 185 90.4 Minus
3L 28110227 3L 19475194..19475245 362..311 185 90.4 Minus
Blast to na_te.dros performed 2014-11-26 14:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 169..94 147 69.7 Minus
micropia 5461 micropia DMDM11 5461bp 3258..3286 1122..1150 127 93.1 Plus

UFO04102.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:08 Download gff for UFO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 47..484 1..440 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:45 Download gff for UFO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 51..488 1..440 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:41 Download gff for UFO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 51..488 1..440 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:41 Download gff for UFO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19475032..19475457 21..445 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:45 Download gff for UFO04102.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19468132..19468557 21..445 98 <- Minus