UFO04102.5prime Sequence
1175 bp (1046 high quality bases) assembled on 2010-09-10
> UFO04102.5prime
CAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCGTTGCCTGC
GCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTACACTGCTCC
TCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGCCGTGGTAG
CTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTATCGCCAGG
AACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTTGCCGCTCC
TGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCCGCTCCTGTGGTGGCCA
AGTACGCTGCTGCTCCATTGGCTGCTCCTGTTGTGGCCAAGTACGCTGCT
GCTCCATTGGCCCACATTTCCTCCTTGGCTTACACCTCGCCTTTGGCATA
CAGTGCCTTGCCATCAGCTCCTGTTCTTCTTGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT
TTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAC
ATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA
CGCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTAT
TCACTCCAGAGCGATGAAACGTTTCAGTTGCTCATGAAAACGGTGTAACA
GGTTGAACACTATCCCATATCACCAGCTCACCGTCTTTTCATTGCATACG
AATCGGATGACATTCTACAGCGGGCCAGATGAATTAGCCGAAAACTTGGC
TTATTTTCTTTACGTCCTATTAAAA
UFO04102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-RA | 507 | CG18294-RA | 55..477 | 9..431 | 2115 | 100 | Plus |
CG12519-RB | 600 | CG12519-RB | 53..360 | 9..316 | 1480 | 98.7 | Plus |
CG12519-RA | 507 | CG12519-RA | 53..360 | 9..316 | 1480 | 98.7 | Plus |
CG18294-RA | 507 | CG18294-RA | 279..368 | 272..361 | 375 | 94.4 | Plus |
CG18294-RA | 507 | CG18294-RA | 318..407 | 233..322 | 375 | 94.4 | Plus |
CG12519-RB | 600 | CG12519-RB | 277..360 | 272..355 | 315 | 91.7 | Plus |
CG18294-RA | 507 | CG18294-RA | 279..330 | 311..362 | 185 | 90.4 | Plus |
CG18294-RA | 507 | CG18294-RA | 357..408 | 233..284 | 185 | 90.4 | Plus |
CG12519-RB | 600 | CG12519-RB | 277..327 | 311..361 | 180 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19475047..19475457 | 431..21 | 2055 | 100 | Minus |
3L | 28110227 | 3L | 19472610..19472905 | 21..316 | 1420 | 98.6 | Plus |
3L | 28110227 | 3L | 19466699..19466962 | 284..21 | 1260 | 98.5 | Minus |
3L | 28110227 | 3L | 19471808..19472096 | 325..31 | 745 | 84.4 | Minus |
3L | 28110227 | 3L | 19475971..19476259 | 31..325 | 745 | 84.4 | Plus |
3L | 28110227 | 3L | 19478373..19478568 | 41..236 | 740 | 91.8 | Plus |
3L | 28110227 | 3L | 19423849..19424044 | 41..236 | 725 | 91.3 | Plus |
3L | 28110227 | 3L | 19467481..19467687 | 31..255 | 700 | 88.4 | Plus |
3L | 28110227 | 3L | 19488045..19488279 | 41..284 | 615 | 84.4 | Plus |
3L | 28110227 | 3L | 19475117..19475206 | 322..233 | 375 | 94.4 | Minus |
3L | 28110227 | 3L | 19475156..19475245 | 361..272 | 375 | 94.4 | Minus |
3L | 28110227 | 3L | 19423125..19423224 | 238..139 | 320 | 88 | Minus |
3L | 28110227 | 3L | 19472822..19472905 | 272..355 | 315 | 91.7 | Plus |
3L | 28110227 | 3L | 19424757..19424836 | 151..230 | 310 | 92.5 | Plus |
3L | 28110227 | 3L | 19471817..19471903 | 355..269 | 255 | 86.2 | Minus |
3L | 28110227 | 3L | 19476164..19476250 | 269..355 | 255 | 86.2 | Plus |
3L | 28110227 | 3L | 19464433..19464518 | 235..150 | 220 | 83.7 | Minus |
3L | 28110227 | 3L | 19475116..19475167 | 284..233 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 19475194..19475245 | 362..311 | 185 | 90.4 | Minus |
Blast to na_te.dros performed 2014-11-26 14:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 169..94 | 147 | 69.7 | Minus |
micropia | 5461 | micropia DMDM11 5461bp | 3258..3286 | 1122..1150 | 127 | 93.1 | Plus |
UFO04102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:08 Download gff for
UFO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 47..484 | 1..440 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:45 Download gff for
UFO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 51..488 | 1..440 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:41 Download gff for
UFO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18294-RA | 51..488 | 1..440 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:41 Download gff for
UFO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19475032..19475457 | 21..445 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:45 Download gff for
UFO04102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19468132..19468557 | 21..445 | 98 | <- | Minus |