UFO04103.5prime Sequence
1130 bp (1024 high quality bases) assembled on 2010-09-10
> UFO04103.5prime
CAGTCGACATGATGGTTGAGTCCGATGGAACCGCCGACGCCACCCGCCGC
CTAAACGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTGCCCGCCAA
CTTCCTGGAGATCGACGTGGTCAATCCGCTGACCACCATGGCGGCGGGCA
AGAAGCGCTACACGGACTACGAGGTCCGGATGCGGACCAATCTGCCCGTC
TTTAAGGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGACTTTGAGTG
GCTGCGAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCCACCACTCC
CAGGAAAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACGAGGGCATC
TTTGACGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAGGCCTTCAT
CAACAAGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTGCCTGCATA
TGTTCCTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCGGCAAGATT
CGGAACACAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAGTTGTCCATTTTGGCCACGTTTAATCAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAACAATTTCTTCATAATCCCTTTAGGAAT
AGGCCAGGTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAA
ACTGACAGATCGTCTGTATCACTCAGAGCCGATGAACGTTCAGTTGCTCA
TGAACCGGTACAGGGGAACCTATCCATACA
UFO04103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx3-RB | 1860 | CG6359-RB | 314..814 | 9..509 | 2505 | 100 | Plus |
| Snx3-RA | 1426 | CG6359-RA | 314..814 | 9..509 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12629220..12629449 | 280..509 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 12628344..12628520 | 9..185 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 12628888..12628984 | 185..281 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:24 has no hits.
UFO04103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:07 Download gff for
UFO04103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6359-RA | 297..813 | 1..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:44 Download gff for
UFO04103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 1..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:39 Download gff for
UFO04103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 1..520 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:39 Download gff for
UFO04103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12628337..12628520 | 1..185 | 97 | -> | Plus |
| 3R | 12628889..12628984 | 186..281 | 100 | -> | Plus |
| 3R | 12629222..12629449 | 282..509 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:44 Download gff for
UFO04103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8454059..8454242 | 1..185 | 97 | -> | Plus |
| arm_3R | 8454611..8454706 | 186..281 | 100 | -> | Plus |
| arm_3R | 8454944..8455171 | 282..509 | 100 | == | Plus |
