UFO04104.5prime Sequence
1142 bp (1020 high quality bases) assembled on 2009-02-13
> UFO04104.5prime
CAGTCGACATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCGATGCCAAG
GGCACGGTTTTCTTCGAACAGGAGAGCAGCGGTACGCCCGTGAAGGTCTC
CGGTGAGGTGTGCGGCCTGGCCAAGGGTCTGCACGGATTCCACGTGCACG
AGTTCGGTGACAACACCAATGGCTGCATGTCGTCCGGACCGCACTTCAAT
CCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGTCACCTGGG
CGATCTGGGCAACATTGAGGCCACCGGCGACTGCCCCACCAAGGTCAACA
TCACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCATCGGACGC
ACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGTGGACACGA
GCTGAGCAAGTCAACGGGCAACGCTGGTGCCCGCATCGGGTGCGGCGTTA
TTGGCATTGCCAAGGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGT
GAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTTCTCATAAACCC
TTTAGGGAATAGCCAGGTTTCACCGTACACGCCACATCTGCGATATATGT
GTAGAACTGCCGGAAATCGTCGTGTATTCACTCGAGCGATGAAACGTTCA
GTTGCTCATGGAACGGGTACAGGGTGAACCTAATCCAATCACAGCTCCCG
TCTTCATTGCACGAAATTCCGGATGACTTCACAGGCGGCAGT
UFO04104.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod-RA | 735 | CG11793-RA | 97..560 | 4..467 | 2305 | 99.8 | Plus |
| Sod-RD | 777 | CG11793-RD | 210..602 | 75..467 | 1965 | 100 | Plus |
| Sod-RD | 777 | CG11793-RD | 97..167 | 4..74 | 340 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11112456..11112850 | 467..73 | 1975 | 100 | Minus |
| 3L | 28110227 | 3L | 11113574..11113644 | 74..4 | 340 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:23 has no hits.
UFO04104.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:15 Download gff for
UFO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod-RA | 92..563 | 1..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:50 Download gff for
UFO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod-RA | 94..565 | 1..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:13 Download gff for
UFO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod-RA | 94..565 | 1..473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:13 Download gff for
UFO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11112456..11112848 | 75..467 | 100 | <- | Minus |
| 3L | 11113574..11113647 | 1..74 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:50 Download gff for
UFO04104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11105556..11105948 | 75..467 | 100 | <- | Minus |
| arm_3L | 11106674..11106747 | 1..74 | 97 | | Minus |
