UFO04105.5prime Sequence
1144 bp (1060 high quality bases) assembled on 2010-09-10
> UFO04105.5prime
CAGTCGACATGGCGAGCTCCGTAATTCTGGCGGGTCTTAGCGTGGCCGCC
GTGGGATTCGCCGGAAAGCACCTGATGCGCCGCATGCCCCAGATGACCAC
CAAATTCAACGAGGCCCTCAAGAACCTGCCCAAATACGATGCGGAGAGCA
TGGCCGCCTCCAAATACTACAAGGGCGGCTTCGATCCCAAGATGAACAAG
CGGGAGGCGTCCCTAATCCTAGGTGTCAGCCCCAGTGCGTCCAAGATAAA
GATTAAGGACGCGCACAAGAAGATCATGCTGTTGAACCATCCGGATCGAG
GAGGATCTCCCTATTTGGCGGCCAAGATCAACGAGGCCAAAGACTTTCTG
GACAAAGCGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACG
GGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAA
ACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATAT
ATGTGTAGAACTGCCCGGAAATCGTCGTGTTATTCACTCCAGAGCGATGA
AAACGTTTCAGTTTGCTCATGGAAACGGTGTACAGGGTGACACTATCCCA
TATCACCAGCCTCACGTCTTTCATTGCCATAACGAAATTCCGGATGACAT
TCATCAAGCGGCAGAATTTGTGATAAGGGCGATAAACCTTGTGCCTTATT
TCCTTACGGTCTTAAGCGTAATTCAGCTGACCGACTGGTTAGTT
UFO04105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7394-RC | 1315 | CG7394-RC | 63..416 | 9..362 | 1770 | 100 | Plus |
| CG7394-RD | 1431 | CG7394-RD | 179..532 | 9..362 | 1770 | 100 | Plus |
| CG7394-RA | 534 | CG7394-RA | 63..416 | 9..362 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11562860..11563100 | 11..251 | 1205 | 100 | Plus |
| 3L | 28110227 | 3L | 11563301..11563413 | 250..362 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:21 has no hits.
UFO04105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:06 Download gff for
UFO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7394-RA | 50..410 | 1..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:42 Download gff for
UFO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7394-RA | 56..416 | 1..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:37 Download gff for
UFO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7394-RA | 56..416 | 1..362 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:37 Download gff for
UFO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11562851..11563100 | 1..251 | 98 | -> | Plus |
| 3L | 11563303..11563413 | 252..362 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:42 Download gff for
UFO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11555951..11556200 | 1..251 | 98 | -> | Plus |
| arm_3L | 11556403..11556513 | 252..362 | 100 | == | Plus |
