UFO04106.5prime Sequence
1141 bp (1024 high quality bases) assembled on 2010-09-10
> UFO04106.5prime
CAGTCGACATGGCGAGGGCGGCTTTTATTGTGTGCCTACTGATGGCCTGT
GCCTGGAGCAGCCATGCGGTGATGTTCAAGCTGTCGCCGAACACCCAGAA
GTGCCTCAAGGAAGACATCCAGGCGAACCAACTGGTTATGGGCGAGTTCG
AAGTTTCCGACGTACCCGGCCAGATCATCGACTACATTGCACGCGACACC
AAGGGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGCAAGTTCAG
CTTCATGTCCGAGGTGTACGATACGTACGAAATCTGCTTTATATCCAAAG
TTCCTGCACATCAACGCGGCGTTATACAGGAAGTATCGCTCTTGACCAAA
AAGGGAGTGGAGACCAAGAGCTACGAAGGCATTGGCGAAGCATCCAAACT
GAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGAGGATCTCTCCGACTCCA
TTGTGCGTGATTTCGTTCTCATGCGCAAGCGGGAGGAGGAAATGCGCGAT
ACCAATGAGAAAACCAACAGCCGCGTGCTGTTCTTCAGCATCTTCAGCAT
GTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGTTCTGTACCTCCGCAGGT
ACTTCAAAGCCAAAAAACTCATCGAAGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAGCATTCTGCCGACATGTAAGCCATCACAAACGGCATGATGACCT
GATCGCAGCGGCATCAGCACCTTGTCGCCTGCGTATATATTTGCCCATGT
GAAACGGGGGCGAGAGGTGTCATATGCCACGTTTAATCAAACTGGTGACT
CACCAGGATGCTGAACGAAAACTTCTCATACCGTTAGGAATAGCCAGGTC
ACGTAACGCCACACTTGTGCATATAGTGTGAACATGTCGCG
UFO04106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bai-RA | 807 | CG11785-RA | 77..694 | 9..626 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25039450..25039630 | 9..189 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 25040022..25040148 | 381..507 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 25039701..25039821 | 189..309 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 25040211..25040330 | 507..626 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 25039881..25039956 | 305..380 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:18 has no hits.
UFO04106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:05 Download gff for
UFO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bai-RA | 76..693 | 9..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:39 Download gff for
UFO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bai-RA | 77..694 | 9..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:35 Download gff for
UFO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bai-RA | 77..694 | 9..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:35 Download gff for
UFO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25040022..25040148 | 381..507 | 100 | -> | Plus |
| 3R | 25040212..25040330 | 508..626 | 100 | == | Plus |
| 3R | 25039450..25039629 | 9..188 | 100 | -> | Plus |
| 3R | 25039701..25039821 | 189..309 | 100 | -> | Plus |
| 3R | 25039886..25039956 | 310..380 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:39 Download gff for
UFO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20865172..20865351 | 9..188 | 100 | -> | Plus |
| arm_3R | 20865423..20865543 | 189..309 | 100 | -> | Plus |
| arm_3R | 20865608..20865678 | 310..380 | 100 | -> | Plus |
| arm_3R | 20865744..20865870 | 381..507 | 100 | -> | Plus |
| arm_3R | 20865934..20866052 | 508..626 | 100 | == | Plus |
