UFO04108.5prime Sequence
1168 bp (1048 high quality bases) assembled on 2010-09-10
> UFO04108.5prime
CAGTCGACATGGCCGCCAACCAGAAGATTGTGTTCGCCCTCGTCTGCCTC
TTTTTGGCATGTGATTTGGTGCTGGGTCAGCAGCAGGCGGCCAACAGCTC
GGATTCGGATTCGGATGTGGCGGAAAGTCGTACTTTTGGCCATCATTTCC
TGCGGCGCATCAGCTTCGCCTTGGTGCCCGGCGCCTTTGTCGTGGGCGTG
ATCACCACCCTGCTGGCGGCCTTGACCGTCGTCTCCATCAAGGGACTGGG
CGTGGGTGTCATCCTGCTGGTGCTGGCCATCGGACAAATGCTGTCCCGTG
CTCTTCCCGTCCAGGCAGCCGCCGCCTATGCCGCAGCACCCGTTCCCGTC
CAGGCACCCGTGCCGGTGGTCTACTCCCACTCGCACACCCAGCAGCCCGT
CTGGTTGGAGAAGGAGTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAAC
TGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTG
CGAATATATGTGTAGAACTGCCGGAAATCGTCGTGCTATTCACTCCAAAG
CGATGAAAACGTTTCAGTTGCTCATGGAAAACGGTGTAACAAGGGTGAAA
ACACTTATTCCAATATTCACAAGCTCAACGTCTTTCAATGCCATACGAAA
ATCCGGAATGAACATAATCAGGCGGGCCAAGAATGTGAATAAGCGATAAA
CCTTGGCATAATTTTCTT
UFO04108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-RA | 863 | CG15887-RA | 103..518 | 4..419 | 2065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13288000..13288296 | 419..123 | 1485 | 100 | Minus |
| 3R | 32079331 | 3R | 13288592..13288711 | 123..4 | 585 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:30:14 has no hits.
UFO04108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:04 Download gff for
UFO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 96..515 | 1..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:37 Download gff for
UFO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 99..518 | 1..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:33 Download gff for
UFO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 99..518 | 1..419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:33 Download gff for
UFO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13288592..13288712 | 1..123 | 97 | | Minus |
| 3R | 13288000..13288295 | 124..419 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:37 Download gff for
UFO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9113722..9114017 | 124..419 | 100 | <- | Minus |
| arm_3R | 9114314..9114434 | 1..123 | 97 | | Minus |
