UFO04109.5prime Sequence
1166 bp (1033 high quality bases) assembled on 2010-09-10
> UFO04109.5prime
CAGTCGACATGGAGGACGACGAGAAAATGGACATCATGCGCAAGGCATTC
CAAATGTTCGACACACAAAAGACGGGCTTCATTGAGACGCTGCGTCTGAA
GACGATCCTCAACAGCATGGGTCAGATGTTCGACGATAGCGAACTGCAGG
CTCTGATCGACGACAACGATCCGGAGGACACCGGCAAGGTTAACTTCGAC
GGCTTCTGCAGCATCGCTGCCCATTTCCTGGAAGAGGAGGATGCCGAGGC
CATCCAGAAGGAGCTGAAAGAGGCCTTTCGTCTGTACGATCGCGAGGGAA
ATGGTTACATCACCACCTCAACGCTGAAGGAAATTCTCGCCGCCCTCGAC
GACAAGCTCTCCTCCAGCGATCTGGACGGCATCATCGCTGAGATTGACAC
TGATGGATCCGGTACCGTGGACTTTGATGAATTCATGGAGATGATGGCGG
GCGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCATAAACCCTTTAGGGAAAT
AGCCAGGTTTTCACCGTAACACGCCACATCTGCGATATATGTGTAGAACT
GCGAAATCGTCGTGTATCACTCAGAGCGATGAAACGTTCAGTTTGCCTCA
TGAACGTGTACAGGGTGAACCTATCCCATATCACAGCTCACCGTCTTCAT
TGCCATACGAATTCGATGACATTCATCAGGCGGGCAGATGTGAATAGGCG
GGATAAACCTTGTGTG
UFO04109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC25D-RC | 1107 | CG6514-RC | 560..1006 | 9..455 | 2235 | 100 | Plus |
| TpnC25D-RA | 645 | CG6514-RA | 98..544 | 9..455 | 2235 | 100 | Plus |
| TpnC25D-RB | 688 | CG6514-RB | 142..587 | 10..455 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5218446..5218864 | 11..429 | 2095 | 100 | Plus |
| 2R | 25286936 | 2R | 11274671..11274793 | 338..216 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:30:11 has no hits.
UFO04109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:03 Download gff for
UFO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 82..538 | 1..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:35 Download gff for
UFO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 87..543 | 1..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:31 Download gff for
UFO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 88..544 | 1..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:31 Download gff for
UFO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5218438..5218864 | 1..429 | 98 | -> | Plus |
| 2L | 5218927..5218952 | 430..455 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:35 Download gff for
UFO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5218438..5218864 | 1..429 | 98 | -> | Plus |
| arm_2L | 5218927..5218952 | 430..455 | 100 | == | Plus |
