UFO04112.5prime Sequence
1077 bp (1051 high quality bases) assembled on 2010-09-10
> UFO04112.5prime
CAGTCGACATGGGAGCCACTAGTGTCGGAGTTCCAGTCTGGAAGATTCAG
CTACTGATTCTGCTGAGTGCAGTTGTTCTCACCATTCAAGCTGCTCCTGT
CGAGGTAACCGAAGGAGTGACCCAACCCCCAGCCGAGAAGCTGCAAACGG
AGTCTCGTTCCCGTAAAGATGAAGAGCTGGAACTAGAAGAAGACCTGGAT
GGACGTAATGCCTATATCAACAATCAGTTTGTGCCAAGCGAACCTGCAGA
AGTCCTAGAGGATGTGCAGAATACGCCGCTCTACGAGATCCTTCAAAAGC
AGATGGAACAAGTGTTGGCCTCATCGGCTCCCAATGACCCTGTCTACGAG
CAGCACCGCGAGAAGCAGGATCGTCGCGATCAGAAACCACCACACCAGCC
ACCGTACTTCTCCGGCGGAGATCGAGATGGTGATCTACAGGATGACTACG
AGGACGAGGAGGATCAGACGGATCAGGGTTATCCGTCGGACCCCGAGAAA
CCGGACGCCGTGTCAGATGCTCCCGAGGATGAGGACCCAGGCTACCAGGC
ACCTTCGTTGAGCCTTCCAACCACCACCACTCGCAAACCGTACAGACGAC
GCAGCACAACCACTTTTCAGCCACGAACCACCAGGACAAGAACCACTGCT
CAGCCCAGGATCTCGGAAAGTCCATTGAACCAAACCAGCACCACAGAGCA
ATCACCAAATGTGACCACCAGCACTCCACGGCCCAAGATTGGTTCCAGCA
CCAAACCCAAGGCAAATCCTCAGCCGGGAAACAGCCTGCCAAGTGACCCG
CAGGTTTACCAGCACAAGCGTCGCATCATCTTCAAGACCATCTCAACGGG
CTCGCAATTCGTCAACTCGCCAATTGGCGACCTAATGATCAAGTTCTCAA
TCGGATTTGCCAAGCCAACCACTCCGGGTGGAGCTACCAGCACTGCGGGT
CACATAGTCGTCCAGTGAGCTTTACGTGCTCTTTCGCAAACTTAATTCGA
AATTTGACTCAAAACTAGAAGAGCATAAGTGCAAAATATGCAGCTTTCTA
GACCATTCGTTGGGCGGCGCCGGGCCA
UFO04112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-RA | 1085 | CG14110-RA | 23..1062 | 9..1036 | 4910 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13384925..13385863 | 71..1005 | 4495 | 99.6 | Plus |
| 3L | 28110227 | 3L | 13384811..13384874 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:32 has no hits.
UFO04112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:09 Download gff for
UFO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 16..1045 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:47 Download gff for
UFO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 18..1047 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:42 Download gff for
UFO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 18..1047 | 1..1024 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:42 Download gff for
UFO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13384806..13384874 | 1..72 | 94 | -> | Plus |
| 3L | 13384927..13385897 | 73..1030 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:47 Download gff for
UFO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13377906..13377974 | 1..72 | 94 | -> | Plus |
| arm_3L | 13378027..13378997 | 73..1030 | 98 | <- | Plus |
