UFO04115.5prime Sequence
698 bp (576 high quality bases) assembled on 2010-09-10
> UFO04115.5prime
CAGTCGACATGGTAGTGCTGAGCTCCTGCTGGTCGCCCATAATTTGGTCG
GATAATGTCCGGACGGGAAGCTATGCCGTGGCCGGCTATACGGCTGCGCT
ATCCGCCGTAATGATCACGCTGATTTCGTATATGCTAGCAGGCGGGGAGT
CTGCGCAGCTCTATTCCCCGCTCTTTGAGACGGATATACGTTCGTCGATG
CCCGTGGCAGGTGGCTTCTTTATCATCTACTTCCTGCTAATCATCCTGTC
TTCCTATTTGGTCTACTACGGTATTAAGATCAGCACTCGAGGATGGCTGC
TACCCTGGCTGGGTCTAATTGGACTAGCCATTCTCTTCCAGTTTAGCTGG
AGCCTTTGGCTTATTGGAGGCTACTATATTTATCTGGAGCAAACCTTCTC
GGCCCTTTTGAACTTCGTTTGGGTAGCCTACAATATCTATTGCTGGCTGG
TGGTCTTCTCGCAGTACCAGATATTCCTGGAGATCCAGAATCCGAACATT
GAGCTGCTCATGCCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATATCATATCATATCATATCATATCCACACTAGCCT
AGGAGATCTGGTCATGACTATGCTGATTCTCACCATAAAAACGCCCGGCG
CACCGAGCGTTCTGAACATTCCGATGGAGTTCGGAGTCATTACTGATC
UFO04115.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7713-RB | 874 | CG7713-RB | 124..632 | 7..515 | 2545 | 100 | Plus |
| CG7713-RA | 816 | CG7713-RA | 66..574 | 7..515 | 2545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17795363..17795639 | 7..283 | 1385 | 100 | Plus |
| 3R | 32079331 | 3R | 17795697..17795800 | 280..383 | 520 | 100 | Plus |
| 3R | 32079331 | 3R | 17795995..17796075 | 435..515 | 405 | 100 | Plus |
| 3R | 32079331 | 3R | 17795863..17795913 | 384..434 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:04 has no hits.
UFO04115.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:02 Download gff for
UFO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7713-RA | 70..583 | 1..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:32 Download gff for
UFO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7713-RA | 70..583 | 1..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:28 Download gff for
UFO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7713-RA | 61..574 | 1..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:28 Download gff for
UFO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17795358..17795639 | 1..283 | 99 | -> | Plus |
| 3R | 17795701..17795800 | 284..383 | 100 | -> | Plus |
| 3R | 17795863..17795913 | 384..434 | 100 | -> | Plus |
| 3R | 17795995..17796075 | 435..515 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:32 Download gff for
UFO04115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13621080..13621361 | 1..283 | 99 | -> | Plus |
| arm_3R | 13621423..13621522 | 284..383 | 100 | -> | Plus |
| arm_3R | 13621585..13621635 | 384..434 | 100 | -> | Plus |
| arm_3R | 13621717..13621797 | 435..515 | 100 | == | Plus |
