UFO04116.5prime Sequence
1170 bp (1040 high quality bases) assembled on 2010-09-10
> UFO04116.5prime
CAGTCGACATGCTGCGATTGCTCCAGAAGAGAACCAATCTCATAAAGCTA
GTAGTACCCGGCCCCCGACTTCACCAGACGATTGCGCAAACAGCGATAAA
GGAAATCCCAGTGATAAAGCCCATCAGCACTCCGAAAAGCGACAAGACCG
TCGGAAGATGGTTCCTGGGAGTCAGCGGCATGGTCTTCGTGGCCGTTGGT
CTAGGCGGAGTAACCCGACTGACAGAGTCCGGACTGTCCATGGTCACTTG
GAAGCTGACGGGTGAACGTATGCCCCGAACCCAGGAGGAATGGGTGCAGG
AGTTCAATCTCTACCAGCAATACCCAGAGTACAAGCTAAAGAATGTGAAT
ATGACCGTGGAGGAGTTCAAGTTCATTTTCATGATGGAGTACATGCACAG
GATGTGGGGTCGTGCCATCGGCGGGTTCTTCCTTTTGCCCGCTGTTTACT
TCTGGAGAAAGGGATACTTCTGTGCGAAGACCAAGAAGAGCGTCCTGCTG
CTGGGCACACTGATTGGCCTGCAAGGTCTGATGGGATGGTACATGGTCAA
GTCCGGGCTGGAAGACAGGTTCCAGGATCCCAACGACGTGCCACGGGTAT
CCCAGTATAGATTGGCCTCCCACCTGGCAGCTGCCTTCGTCCTGTACTCA
CTCTCCCTGTCAAAGGCCATGTCCCTGCTCATCCCCACGAACACATTCGT
GATCCAAGCCAAGAAAGCATTTAATATCAAGGGGCTGACGCATTTGACGA
AGGCAATGGTCCTGCTGACTGCCATTTCTGGAGCCTTTGTAGCCGGACTA
GACGCCGGACTCGTGTACAACTCGTTCCCGAAGATGGGCGACAAGTGGAT
TCCCGATGACATGTGGACGTTTGCGCCCATACAGAAGACATCACCGAGAA
TCCGACGACGGTGCAGTTCATCACGCATCCTTGGTATTAGCACAGTAACG
CTGACCACCGCTCTGTGCTGGTCACCAGAAGGATGCAGTGCCCAGCGCGC
ACTGGGCCATCAACGCGTGGTGCTATGGCCTGACGCAGCCACGCTTGGCG
TACCCCCTTGCTTACTACGTGCCGTTCCTCTGCACGCCCACCAGTCGGCT
CGCTTATTCTGCTGAGTTCGCATTGGGCGTCCACAGTTCACGTGACTACC
TTCCGAGGCAGCTTCTAGAA
UFO04116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3803-RA | 1340 | CG3803-RA | 134..1270 | 9..1125 | 5165 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23952591..23953390 | 1118..338 | 3085 | 96.8 | Minus |
| 2R | 25286936 | 2R | 23953449..23953583 | 337..203 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 23953638..23953743 | 205..100 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 23953822..23953915 | 102..9 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:30:01 has no hits.
UFO04116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:01 Download gff for
UFO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 97..1249 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:30 Download gff for
UFO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 121..1273 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:27 Download gff for
UFO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 130..1282 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:27 Download gff for
UFO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23952571..23953390 | 338..1134 | 96 | <- | Minus |
| 2R | 23953449..23953581 | 205..337 | 100 | <- | Minus |
| 2R | 23953639..23953741 | 102..204 | 100 | <- | Minus |
| 2R | 23953823..23953919 | 1..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:30 Download gff for
UFO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19840094..19840913 | 338..1134 | 96 | <- | Minus |
| arm_2R | 19840972..19841104 | 205..337 | 100 | <- | Minus |
| arm_2R | 19841162..19841264 | 102..204 | 100 | <- | Minus |
| arm_2R | 19841346..19841442 | 1..101 | 96 | | Minus |
